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Carg14667 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14667
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionhistone H2B-like
Genome locationCarg_Chr01:9562528..9564150
RNA-Seq ExpressionCarg14667
SyntenyCarg14667
Gene Ontology termsGO:0006334 - nucleosome assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR000558 - Histone H2B
IPR009072 - Histone-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586013.1 Histone H2B.4, partial [Cucurbita argyrosperma subsp. sororia]7.7e-4497.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVV+GESQDVT+EPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
KAG7037380.1 Histone H2B.2, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-72100Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGG

Query:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
        QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
Subjt:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP
XP_022937552.1 histone H2B.6-like isoform X1 [Cucurbita moschata]1.2e-6064.71Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+  
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--

Query:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA
                                                                                  GGQTLSSREIQGAVKLVFPGELGKHA
Subjt:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA

Query:  VAEGTKAVSTYVSYDHRRTQP
        VAEGTKAVSTYVSYDHRRTQP
Subjt:  VAEGTKAVSTYVSYDHRRTQP
XP_022969528.1 histone H2B, gonadal-like isoform X1 [Cucurbita maxima]4.6e-5762.44Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+T+EPATAETGGD VFRRTI VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RN  
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--

Query:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA
                                                                                  GGQTLSSREIQGAVKLVFPGELGKHA
Subjt:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA

Query:  VAEGTKAVSTYVSYDHRRTQP
        VAEGTKAVSTYVSYDHRRTQP
Subjt:  VAEGTKAVSTYVSYDHRRTQP
XP_023537504.1 histone H2B-like [Cucurbita pepo subsp. pepo]3.4e-6064.25Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRR IPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN  
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--

Query:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA
                                                                                  GGQTLSSREIQGAVKLVFPGELGKHA
Subjt:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA

Query:  VAEGTKAVSTYVSYDHRRTQP
        VAEGTKAVSTYVSYDHRRT+P
Subjt:  VAEGTKAVSTYVSYDHRRTQP
TrEMBL top hitse value%identityAlignment
A0A5D3BHX3 Histone H2B type 1-A-like1.2e-3451.81Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAET--GGDGVFRRTIPVED---------PQTSPVWGDVKLTRPVDSTSEVTEDKDVT
        MPPRRSRR+VGSVVRTTT+VVEETV VAVVE ESQD+T+EP TAET  GG  +FRR +PVE+         P T PV  + ++ R  DSTS++TED  VT
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAET--GGDGVFRRTIPVED---------PQTSPVWGDVKLTRPVDSTSEVTEDKDVT

Query:  GKMESKA--------------------------------------RNGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ
         +ME +                                         GG TLSSREIQGAV+LV PGELGKHA+AEGTKAVS YVSY +R T+
Subjt:  GKMESKA--------------------------------------RNGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQ
A0A6J1FBI7 histone H2B.6-like isoform X15.7e-6164.71Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+  
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--

Query:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA
                                                                                  GGQTLSSREIQGAVKLVFPGELGKHA
Subjt:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA

Query:  VAEGTKAVSTYVSYDHRRTQP
        VAEGTKAVSTYVSYDHRRTQP
Subjt:  VAEGTKAVSTYVSYDHRRTQP
A0A6J1FGB7 histone H2B.1-like isoform X26.4e-4497.98Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVT+EPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKAR+G
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
A0A6J1I190 histone H2B, gonadal-like isoform X12.3e-5762.44Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+T+EPATAETGGD VFRRTI VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RN  
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARN--

Query:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA
                                                                                  GGQTLSSREIQGAVKLVFPGELGKHA
Subjt:  --------------------------------------------------------------------------GGQTLSSREIQGAVKLVFPGELGKHA

Query:  VAEGTKAVSTYVSYDHRRTQP
        VAEGTKAVSTYVSYDHRRTQP
Subjt:  VAEGTKAVSTYVSYDHRRTQP
A0A6J1I2V8 histone H2B.4-like isoform X22.5e-4092.93Show/hide
Query:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
        MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQD+T+EPATAETGGD VFRRTI VEDP+TS VWGDVKLTRPVDSTSEVTEDKDVTGKMESK RNG
Subjt:  MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNG
SwissProt top hitse value%identityAlignment
P04255 Histone H2B 12.7e-0767.5Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
Q27484 Probable histone H2B 32.7e-0767.5Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
Q27894 Histone H2B 22.7e-0767.5Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T+SSREIQ AV+L+ PGEL KHAV+EGTKAV+ Y S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
Q59VP1 Histone H2B.22.1e-0736.04Show/hide
Query:  REPATAETGG-DGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTED------KDVTGKMESKAR-----NGGQTLSSREIQGAVKLVFPGELGKHAVA
        ++PA  +T   DG  +RT   ++  +S ++  +K T P    S+           D+  ++ S+A      N   T+S+REIQ AV+L+ PGEL KHAV+
Subjt:  REPATAETGG-DGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTED------KDVTGKMESKAR-----NGGQTLSSREIQGAVKLVFPGELGKHAVA

Query:  EGTKAVSTYVS
        EGT+AV+ Y S
Subjt:  EGTKAVSTYVS
Q9SGE3 Histone H2B.23.7e-0969.05Show/hide
Query:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR
        +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Subjt:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR
Arabidopsis top hitse value%identityAlignment
AT1G07790.1 Histone superfamily protein1.2e-0765Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
AT1G08170.1 Histone superfamily protein2.7e-1069.05Show/hide
Query:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR
        +TLSSREI+ AV+LV PGEL +HAVAEG+KAVS +V YD R+
Subjt:  QTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVSYDHRR
AT2G28720.1 Histone superfamily protein1.2e-0765Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
AT2G37470.1 Histone superfamily protein1.2e-0765Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
AT3G46030.1 Histone superfamily protein1.2e-0765Show/hide
Query:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS
        N   T++SREIQ AV+LV PGEL KHAV+EGTKAV+ + S
Subjt:  NGGQTLSSREIQGAVKLVFPGELGKHAVAEGTKAVSTYVS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGT
TACTCGAGAGCCAGCAACGGCGGAAACCGGCGGTGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAA
GGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGG
GCGGTGAAGCTGGTGTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCTGAGGGGACTAAAGCGGTGTCAACTTACGTCTCTTATGATCATAGGAGAACCCAACCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGCCGAGGCGATCCCGTAGAATTGTCGGTTCTGTCGTCCGGACAACCACCAAGGTAGTGGAAGAAACTGTGCATGTGGCTGTGGTGGAGGGAGAGAGCCAGGATGT
TACTCGAGAGCCAGCAACGGCGGAAACCGGCGGTGATGGAGTGTTTCGGAGGACTATTCCGGTGGAAGACCCCCAAACTTCGCCGGTGTGGGGAGATGTCAAGCTGACAA
GGCCTGTAGATTCCACCTCAGAGGTCACGGAGGACAAGGATGTGACGGGGAAGATGGAATCTAAAGCCAGGAATGGCGGGCAGACGCTGTCATCAAGGGAGATACAGGGG
GCGGTGAAGCTGGTGTTCCCGGGAGAGCTAGGGAAGCACGCCGTTGCTGAGGGGACTAAAGCGGTGTCAACTTACGTCTCTTATGATCATAGGAGAACCCAACCATAG
Protein sequenceShow/hide protein sequence
MPPRRSRRIVGSVVRTTTKVVEETVHVAVVEGESQDVTREPATAETGGDGVFRRTIPVEDPQTSPVWGDVKLTRPVDSTSEVTEDKDVTGKMESKARNGGQTLSSREIQG
AVKLVFPGELGKHAVAEGTKAVSTYVSYDHRRTQP