; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg14695 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14695
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranslation initiation factor IF-1, chloroplastic-like
Genome locationCarg_Chr01:9785396..9785824
RNA-Seq ExpressionCarg14695
SyntenyCarg14695
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0043022 - ribosome binding (molecular function)
InterPro domainsIPR004368 - Translation initiation factor IF-1
IPR006196 - RNA-binding domain, S1, IF1 type
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064332.1 translation initiation factor IF-1 [Cucumis melo var. makuwa]2.3e-5682.52Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFP +KSH+SVVSI FP+SQFLH PSH P  F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RS+ KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS

KAG6607876.1 Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.5e-7197.89Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPPSTFLFPAIKSH+SVVSIPFPSSQFLHNPSHG  SFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

XP_011654076.1 uncharacterized protein LOC101206284 [Cucumis sativus]2.0e-5782.39Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +FV MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

XP_022940969.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita moschata]1.0e-72100Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

XP_022981301.1 translation initiation factor IF-1, chloroplastic-like [Cucurbita maxima]8.8e-6995.07Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPP T LFP  KSH+SVVSIPFPSSQFLHNPSHGP SF PMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

TrEMBL top hitse value%identityAlignment
A0A0A0L4Q7 S1-like domain-containing protein9.9e-5882.39Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFPA+KSH+S+ SI FP+SQFLH PSH   +FV MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDN+DLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RSTKD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

A0A5A7V7J3 Translation initiation factor IF-11.1e-5682.52Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQ   RPPST LFP +KSH+SVVSI FP+SQFLH PSH P  F  MAKSPK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR RS+ KD SS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST-KDPSS

A0A6J1FLU6 translation initiation factor IF-1, chloroplastic-like4.9e-73100Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

A0A6J1IP00 uncharacterized protein LOC1114769473.5e-5581.02Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLL+FPLL    RPPST  FPAIKSH+SVVSI FP+SQFL NPSHGP  F  MAK PKS+S+EQK+S+EGS++ESLPNGMFRV+LDNEDLILGYI 
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYR+RS+
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST

A0A6J1IW62 translation initiation factor IF-1, chloroplastic-like4.3e-6995.07Show/hide
Query:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
        MSSTNLLQFPLLQFQCRPP T LFP  KSH+SVVSIPFPSSQFLHNPSHGP SF PMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS
Subjt:  MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYIS

Query:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
        GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS
Subjt:  GKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS

SwissProt top hitse value%identityAlignment
A0A370 Translation initiation factor IF-1, chloroplastic1.1e-2677.14Show/hide
Query:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQK++HEG + ESLPNGMFRV+LDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YR R+
Subjt:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

A6MMP2 Translation initiation factor IF-1, chloroplastic8.7e-2778.57Show/hide
Query:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQK  HEG +IESLPNGMFRV+LDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDSTKGRI+YR R+
Subjt:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q09G11 Translation initiation factor IF-1, chloroplastic1.1e-2678.57Show/hide
Query:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        EQK+ HEG + ESLPNGMFRV+LDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST+GRI+YR RS
Subjt:  EQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS

Q94KR7 Translation initiation factor IF-1, chloroplastic6.0e-2871.43Show/hide
Query:  PSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST
        P+   +S    AK  K  S EQK+ HEG ++ESLPNGMFRV+LDNEDLILGYISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYR RS+
Subjt:  PSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRST

Q94KR9 Translation initiation factor IF-1, chloroplastic2.3e-2773.33Show/hide
Query:  SSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKD
        S EQK++HEGS+ ESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV++EVSRYDS+KGRI+YR R  ++
Subjt:  SSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRSTKD

Arabidopsis top hitse value%identityAlignment
AT4G11175.1 Nucleic acid-binding, OB-fold-like protein8.6e-2265.79Show/hide
Query:  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS
        P+ +    K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+S YDSTKGRI++R  S
Subjt:  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRHRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTCTACTTTCCTTTTTCCGGCCATCAAATCGCATGTCTCGGTCGTCTCAATCCC
GTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGTGAGCTTCGTTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCATGAAG
GCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATTCCAATGCCGGCCACCGTCTACTTTCCTTTTTCCGGCCATCAAATCGCATGTCTCGGTCGTCTCAATCCC
GTTTCCGAGTTCTCAATTCCTCCACAACCCTTCCCATGGTCCGGTGAGCTTCGTTCCAATGGCGAAATCTCCAAAAAGCGAGAGTTCAGAGCAGAAATTCAGTCATGAAG
GCTCGGTTATCGAATCTCTTCCCAACGGAATGTTCAGAGTTCAATTGGACAATGAAGACCTAATTCTTGGCTACATCTCGGGTAAGATTCGGAAGAATTTCGTGCGTATT
TTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGCCGTTATGATTCTACTAAAGGCCGTATTGTCTATAGACATCGAAGTACTAAGGATCCATCTTCATGA
Protein sequenceShow/hide protein sequence
MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRI
LPGDRVRVEVSRYDSTKGRIVYRHRSTKDPSS