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Carg14772 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14772
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationCarg_Chr01:10338734..10339177
RNA-Seq ExpressionCarg14772
SyntenyCarg14772
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037480.1 hypothetical protein SDJN02_01107, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-44100Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFS
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFS
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFS

Query:  MV
        MV
Subjt:  MV

XP_022940121.1 uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata]1.1e-3698.86Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

XP_022940122.1 uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata]1.1e-3698.86Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

XP_022981117.1 uncharacterized protein LOC111480361 [Cucurbita maxima]8.7e-3493.18Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

XP_023523877.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo]3.2e-3697.73Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

TrEMBL top hitse value%identityAlignment
A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 74.6e-2578.16Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS
        MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDR+T+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 72.7e-2577.27Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDR+T++
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 75.3e-3798.86Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 75.3e-3798.86Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

A0A6J1J178 Biogenesis of lysosome-related organelles complex 1 subunit 74.2e-3493.18Show/hide
Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTS+
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related1.6e-0657.78Show/hide
Query:  GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD
        G   A+A GLS+ML ++++DFDSKA DTL SQ +LS SLDRL  +
Subjt:  GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGA
TATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAA
GCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGATATCGAGGAAGAAAATGA
TATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAGCTGATGATACTCTTAAAA
GCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGATGCAAAAATGAAGCTTCTGAGTTTCATGGTTTTTTCAATGGTATAA
Protein sequenceShow/hide protein sequence
MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSDAKMKLLSFMVFSMV