; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg14851 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14851
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionupstream activation factor subunit spp27-like
Genome locationCarg_Chr14:13886978..13889976
RNA-Seq ExpressionCarg14851
SyntenyCarg14851
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582547.1 hypothetical protein SDJN03_22549, partial [Cucurbita argyrosperma subsp. sororia]8.6e-78100Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
        MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Subjt:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

XP_022146901.1 upstream activation factor subunit spp27-like [Momordica charantia]7.3e-6182.47Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDA
        MSSG SNGIRVFRGCR+LLAP KSSA+VP   A KSK   K  +E KEKT   SD AAAAAPKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDA

Query:  VKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        VKQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

XP_022924718.1 upstream activation factor subunit spp27-like [Cucurbita moschata]2.1e-7698.69Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
        MSSGFSNGIRVFRGC SLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTP RSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Subjt:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

XP_022980440.1 protein TRI1-like [Cucurbita maxima]2.3e-7091.5Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
        MSSGFSNGIRVFRGCR+LLAP KSSATVPP AVKS+T SKSN EPKEKTP RSDVAAAAAPKPK +REMTR TG LKV QVSPALGNFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        KQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Subjt:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

XP_023527131.1 upstream activation factor subunit spp27-like [Cucurbita pepo subsp. pepo]8.3e-6597.04Show/hide
Query:  LAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNK
        L P KSSATVPPTAVKSKTISKSNAEPKEKTP RSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP+NK
Subjt:  LAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNK

Query:  REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Subjt:  REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

TrEMBL top hitse value%identityAlignment
A0A0A0L3V0 SWIB domain-containing protein4.5e-5677.07Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAE---PKEKTPTRSDVA-AAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASR
        MSSGF+NGIRVFR CR+LLAP KSSATVP TA KSKT SK   +   PK KTP  S  A  AA P+PK ++EM+RP+G+LKV QVSPAL NFLGVSEASR
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAE---PKEKTPTRSDVA-AAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASR

Query:  TDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        +DAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Subjt:  TDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

A0A1S3AVG6 upstream activation factor subunit UAF30-like5.0e-5575.64Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAE-PKEKTPTRSDVAA--AAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRT
        MSSGF+NG+RVFR CR+LLAP KSSATVP TA KSKT +K   + PK KTP  S  AA  AA P+PK ++  +RP+G+LKV QVSPAL NFLGVSEASRT
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAE-PKEKTPTRSDVAA--AAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRT

Query:  DAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        DAV QIWSYIKLHNLQNP NKREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Subjt:  DAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

A0A6J1D0R8 upstream activation factor subunit spp27-like3.5e-6182.47Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDA
        MSSG SNGIRVFRGCR+LLAP KSSA+VP   A KSK   K  +E KEKT   SD AAAAAPKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDA
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDA

Query:  VKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        VKQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Subjt:  VKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

A0A6J1EDA2 upstream activation factor subunit spp27-like1.0e-7698.69Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
        MSSGFSNGIRVFRGC SLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTP RSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Subjt:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

A0A6J1IWB1 protein TRI1-like1.1e-7091.5Show/hide
Query:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV
        MSSGFSNGIRVFRGCR+LLAP KSSATVPP AVKS+T SKSN EPKEKTP RSDVAAAAAPKPK +REMTR TG LKV QVSPALGNFLGVSEASRTDAV
Subjt:  MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAV

Query:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        KQIWSYIKLHNLQNP+NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Subjt:  KQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp276.5e-1237.04Show/hide
Query:  PPTAVKSKTISKSNAE----PKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCD
        P    K K  +++  E    P ++T  R +       + + Q     P  L K  ++SP L  FLG+ + SR   VK++W YIK H+LQ+P++KR I CD
Subjt:  PPTAVKSKTISKSNAE----PKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCD

Query:  DKLKAIFE
        DKLK++FE
Subjt:  DKLKAIFE

Q05024 Protein TRI15.5e-1134.48Show/hide
Query:  SKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGL-LKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEG
        S  + K    P   T  R   + + + + K + +      + ++   +S  L  FLG  E  RT  VK IW YIK H+LQNP ++REI CD+K++ IF  
Subjt:  SKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGL-LKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEG

Query:  REKVGFLEIGKLLTRH
         +K+    + KLLT+H
Subjt:  REKVGFLEIGKLLTRH

Q08747 Upstream activation factor subunit UAF306.5e-1236.23Show/hide
Query:  RSLLAPLKSSATVPPTAVKSKTISK-SNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQN
        RSL   LK +AT+     K  T+SK S+ E K  + T+         + K       P    KV  +S +L + LG  E +RT+ V+++W+YIK HNLQN
Subjt:  RSLLAPLKSSATVPPTAVKSKTISK-SNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQN

Query:  PSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVK
        P+NK+EI CD+KL+ I    +     E+ K+L  H  +
Subjt:  PSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVK

Q2TBN1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 13.1e-0635.29Show/hide
Query:  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLL
        F++ P L   LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ F EI + L
Subjt:  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLL

Q9P7S3 SWI/SNF and RSC complexes subunit ssr32.0e-0840Show/hide
Query:  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTR
        +++S A  N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ F  I +L+ R
Subjt:  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTR

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein3.2e-2256.25Show/hide
Query:  GLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        G+ K   VS  L +F G  E +R  A+K++W Y+KLHNLQNP+NK+EI+CDDKLK IF+G++KVG  EI KLL+ HF K+
Subjt:  GLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

AT2G14880.1 SWIB/MDM2 domain superfamily protein7.1e-2256.25Show/hide
Query:  PTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFV
        P G++K   VSP + + + + E +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IFEGR++VGFLEI KL+  HF+
Subjt:  PTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein8.1e-2665.43Show/hide
Query:  TGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
        TG+LKV  VS  L NF+G +E SRT AVK+IW YIKL+NLQNP NKREI CD++LK IF G++ VGFLEI KLL++HF K+
Subjt:  TGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

AT3G03590.1 SWIB/MDM2 domain superfamily protein3.4e-3251.75Show/hide
Query:  VFRGCRSLLAPL-KSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKL
        VFRG RSLLAP  ++++++       K  +K  A+ K K   +SD  A   P         R TG+ KV  VSP L  FLG  E SRTDA+K IW+YIK 
Subjt:  VFRGCRSLLAPL-KSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKL

Query:  HNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVK
        H+LQNP++KREI+CD+ LK IFEG++KVGFLEI KLL+ HFVK
Subjt:  HNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVK

AT4G34290.1 SWIB/MDM2 domain superfamily protein8.4e-2345.86Show/hide
Query:  APLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTR-PTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNK
        APL+SS   P       ++  S   P      R+  +AAAA         TR P G++K   VS A+ + +GV E  RT A+K+IW+YIK H+LQ+P NK
Subjt:  APLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTR-PTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNK

Query:  REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFV
        R+I CD+KLK IFEG+E+VGFLEI KL+  HF+
Subjt:  REIYCDDKLKAIFEGREKVGFLEIGKLLTRHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCAGATCTCTCTTAGCTCCGTTGAAATCTTCTGCTACCGTCCCCCCCACCGCTGTCAAATCGAAGAC
GATCTCGAAGTCGAACGCTGAGCCGAAGGAGAAGACTCCTACGAGGTCCGATGTTGCGGCTGCAGCCGCACCCAAGCCGAAATTTCAGAGGGAGATGACTCGACCGACGG
GGTTACTGAAAGTCTTCCAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCAT
AACCTTCAGAATCCTTCCAACAAAAGAGAGATTTACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCAC
TCGCCATTTTGTGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
TCTTGCTTTTATATTGCTTCCATATTTTAAAAAATGAAGAAAAATTTGAGCATAAATAATTTCATTAAAATTATCGATAAATTCTCTCCAAAGGACAAGTGGGCCAAAGG
CTGTCCAAATGTTACGTACTTCGGAGCGGATTGTCCCTTCGTTTCCCGCGACTCTCTCTGATTCTTCTCCTCACTGAACCCTCCGCCGGAAACCGACTGCAACACCCGAG
CGAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCAGATCTCTCTTAGCTCCGTTGAAATCTTCTGCTACCGTCCCCCCCACCGCTGTCAA
ATCGAAGACGATCTCGAAGTCGAACGCTGAGCCGAAGGAGAAGACTCCTACGAGGTCCGATGTTGCGGCTGCAGCCGCACCCAAGCCGAAATTTCAGAGGGAGATGACTC
GACCGACGGGGTTACTGAAAGTCTTCCAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATC
AAGCTCCATAACCTTCAGAATCCTTCCAACAAAAGAGAGATTTACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAA
ATTGCTCACTCGCCATTTTGTGAAGAACTGATCGCCAAATTCCCAAGCTTTCTGGTTGTTAGGCTCTCTTTGGCTCACGTGTTTTTAGGCAAACTTGCTCAACTTCTTGT
AGATGGTGCATTTTTAGGCTTACTTCAATGTGGTGTCTGGTAAGTTTTCTTGTAAAAATGATAGCACTTAAACTAATGGTTTCCATCTTCTTCACCCTCCATGGCCATTG
GTTCATAGAAGGCAGGGGTGGTTCCATTTGTTACTAGATTTAGTGATTTCGGTAGTCGTAGTTATCTTATCTAATTGAGTCACCTTTTGGAACCCGCTACTAGACCGTTT
GATTAATTTTTCGCCCCTATATTTAAGTCAGACGAATGATTTGCACGTT
Protein sequenceShow/hide protein sequence
MSSGFSNGIRVFRGCRSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPTRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLH
NLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN