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Carg14900 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14900
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCarg_Chr14:13629108..13632280
RNA-Seq ExpressionCarg14900
SyntenyCarg14900
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018888.1 hypothetical protein SDJN02_20761, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-59100Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGYLGCDFQSSQDIKQDKLKEAHSHMTFAVETHGRTLQRVHASEELTYTLSLRSLQTNDFPKTAI
        MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGYLGCDFQSSQDIKQDKLKEAHSHMTFAVETHGRTLQRVHASEELTYTLSLRSLQTNDFPKTAI
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGYLGCDFQSSQDIKQDKLKEAHSHMTFAVETHGRTLQRVHASEELTYTLSLRSLQTNDFPKTAI

Query:  VEVSTERKNAPRNTLYDL
        VEVSTERKNAPRNTLYDL
Subjt:  VEVSTERKNAPRNTLYDL
XP_004134368.1 RING-H2 finger protein ATL51 [Cucumis sativus]9.4e-0881.58Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE  HSNH+TGV NLGMNRSISTGKLG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
XP_008438300.1 PREDICTED: RING-H2 finger protein ATL52 [Cucumis melo]9.4e-0881.58Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE  HSNH+TGV NLGMNRSISTGKLG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
XP_022147036.1 RING-H2 finger protein ATL52-like [Momordica charantia]6.8e-0673.68Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE   SNHK GV NLGMNRS+STG+LG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
XP_038901021.1 RING-H2 finger protein ATL52-like [Benincasa hispida]1.3e-0471.05Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSS++F QE  + NHK GV N GMNRSISTGKLG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
TrEMBL top hitse value%identityAlignment
A0A0A0L405 RING-type E3 ubiquitin transferase4.6e-0881.58Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE  HSNH+TGV NLGMNRSISTGKLG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
A0A1S3AW58 RING-type E3 ubiquitin transferase4.6e-0881.58Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE  HSNH+TGV NLGMNRSISTGKLG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
A0A5D3D2D1 RING-type E3 ubiquitin transferase4.6e-0881.58Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE  HSNH+TGV NLGMNRSISTGKLG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
A0A6J1D151 RING-type E3 ubiquitin transferase3.3e-0673.68Show/hide
Query:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
        MGIGSSK+F QE   SNHK GV NLGMNRS+STG+LG+
Subjt:  MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGY
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATTGGATCTTCAAAACTATTTGCTCAAGAGCTTTGCCATTCCAATCACAAAACTGGGGTTTTCAACTTGGGAATGAATAGATCTATTTCAACTGGAAAACTGGG
TTATTTGGGCTGTGACTTCCAGTCATCACAAGATATAAAGCAAGACAAGCTAAAGGAAGCACATTCTCACATGACATTTGCAGTTGAAACCCATGGCAGAACCTTGCAAC
GAGTTCATGCTTCTGAGGAATTGACCTATACTCTCTCTCTCAGATCATTACAGACGAATGATTTTCCCAAAACTGCAATCGTAGAGGTCTCGACTGAAAGAAAGAACGCT
CCTCGAAATACACTGTACGATCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGATTGGATCTTCAAAACTATTTGCTCAAGAGCTTTGCCATTCCAATCACAAAACTGGGGTTTTCAACTTGGGAATGAATAGATCTATTTCAACTGGAAAACTGGG
TTATTTGGGCTGTGACTTCCAGTCATCACAAGATATAAAGCAAGACAAGCTAAAGGAAGCACATTCTCACATGACATTTGCAGTTGAAACCCATGGCAGAACCTTGCAAC
GAGTTCATGCTTCTGAGGAATTGACCTATACTCTCTCTCTCAGATCATTACAGACGAATGATTTTCCCAAAACTGCAATCGTAGAGGTCTCGACTGAAAGAAAGAACGCT
CCTCGAAATACACTGTACGATCTCTAA
Protein sequenceShow/hide protein sequence
MGIGSSKLFAQELCHSNHKTGVFNLGMNRSISTGKLGYLGCDFQSSQDIKQDKLKEAHSHMTFAVETHGRTLQRVHASEELTYTLSLRSLQTNDFPKTAIVEVSTERKNA
PRNTLYDL