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Carg14925 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14925
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncytochrome c6, chloroplastic
Genome locationCarg_Chr07:89026..91795
RNA-Seq ExpressionCarg14925
SyntenyCarg14925
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004506 - squalene monooxygenase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0009055 - electron transfer activity (molecular function)
GO:0020037 - heme binding (molecular function)
GO:0050660 - flavin adenine dinucleotide binding (molecular function)
InterPro domainsIPR009056 - Cytochrome c-like domain
IPR023655 - Cytochrome c6
IPR036909 - Cytochrome c-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594380.1 Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.0e-7097.83Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTP-GCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFG
        MRRQVKILKTLAPPLIAVLIALYPLNKTP GCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERN ADSEEEIYQITYYGKGRMPGFG
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTP-GCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFG

Query:  ENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        ENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW NP
Subjt:  ENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

KAG7026384.1 Cytochrome c6, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-74100Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

XP_022926876.1 cytochrome c6, chloroplastic [Cucurbita moschata]6.7e-74100Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

XP_023003546.1 cytochrome c6, chloroplastic [Cucurbita maxima]2.2e-7297.81Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        MRRQVK LK LAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHD GGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

XP_023517564.1 cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]3.3e-7399.27Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        MRRQV ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

TrEMBL top hitse value%identityAlignment
A0A0A0KPD1 Cytochrome c domain-containing protein8.3e-6283.94Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        +R QVKILK L PPLIA+L+ L PLNKT GC  LA++ EIERGGALF+ +CIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITY GKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

A0A1S3AYD3 cytochrome c6, chloroplastic2.3e-6486.13Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        +R  VKIL+TLAPPLIA+L+ L PLNKTPGC  LA++ EIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

A0A6J1CXZ2 cytochrome c6, chloroplastic1.2e-6085.19Show/hide
Query:  RQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENC
        +Q+KI K+ APPLIAVLIAL P+ KTPGC  LAQ+ EIERGGALFS +CIGCHD GGNIIQPGATLFSSDLERNGAD EEEIY ITYYGKGRMPGFGENC
Subjt:  RQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENC

Query:  KPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        KPRGQCTFGPRLQE+EIR+LAKFVKIQADRGW NP
Subjt:  KPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

A0A6J1EG38 cytochrome c6, chloroplastic3.3e-74100Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

A0A6J1KPJ4 cytochrome c6, chloroplastic1.1e-7297.81Show/hide
Query:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
        MRRQVK LK LAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHD GGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE
Subjt:  MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGE

Query:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
        NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP
Subjt:  NCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP

SwissProt top hitse value%identityAlignment
P00110 Cytochrome c61.2e-0936.73Show/hide
Query:  AEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEI-YQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW
        A+IE G  +F+  C  CH  G N+I P  TL    LE NG ++   I YQ+T  GK  MP             FG RL + +I  +A +V  Q+++GW
Subjt:  AEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEI-YQITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGW

P07497 Cytochrome c61.4e-1031.78Show/hide
Query:  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPR
        +IL T    L+ +L  + P          AQ+A++  GG +FS  C  CH  G N++ P  TL  +DL++ G  S E I      GKG MP FG      
Subjt:  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPR

Query:  GQCTFGPRLQEEEIRVLAKFVKIQADRGW
               +L  ++I  +A +V  Q+++GW
Subjt:  GQCTFGPRLQEEEIRVLAKFVKIQADRGW

P25935 Cytochrome c61.4e-1031.78Show/hide
Query:  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPR
        +IL T    L+ +L  + P          AQ+A++  GG +FS  C  CH  G N++ P  TL  +DL++ G  S E I      GKG MP FG      
Subjt:  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPR

Query:  GQCTFGPRLQEEEIRVLAKFVKIQADRGW
               +L  ++I  +A +V  Q+++GW
Subjt:  GQCTFGPRLQEEEIRVLAKFVKIQADRGW

P46445 Cytochrome c61.2e-0931.78Show/hide
Query:  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPR
        +I   +A P +  L  ++ L  T      A +A++  G A+F+  C  CH+ G N I P  TL  +DLE NG +S   I      G G MPGF      +
Subjt:  KILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPR

Query:  GQCTFGPRLQEEEIRVLAKFVKIQADRGW
        G      R+ + ++  +A +V  QA++GW
Subjt:  GQCTFGPRLQEEEIRVLAKFVKIQADRGW

Q93VA3 Cytochrome c6, chloroplastic9.2e-5069.77Show/hide
Query:  ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRG
        +LK LAPPL AVL+A+ P+   P   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPGATLF+ DLERNG D+EEEIY++TY+GKGRMPGFGE C PRG
Subjt:  ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRG

Query:  QCTFGPRLQEEEIRVLAKFVKIQADRGWP
        QCTFGPRLQ+EEI++LA+FVK QAD+GWP
Subjt:  QCTFGPRLQEEEIRVLAKFVKIQADRGWP

Arabidopsis top hitse value%identityAlignment
AT5G45040.1 Cytochrome c6.5e-5169.77Show/hide
Query:  ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRG
        +LK LAPPL AVL+A+ P+   P   +L Q+ +I+RG  LF+ ACIGCHD GGNIIQPGATLF+ DLERNG D+EEEIY++TY+GKGRMPGFGE C PRG
Subjt:  ILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRG

Query:  QCTFGPRLQEEEIRVLAKFVKIQADRGWP
        QCTFGPRLQ+EEI++LA+FVK QAD+GWP
Subjt:  QCTFGPRLQEEEIRVLAKFVKIQADRGWP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGATGTTATGCGCTTGCTCAATC
GGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTG
AAAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTT
GGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCCAAACCCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGACAAGTTAAGATTCTCAAGACCTTGGCGCCCCCTCTGATTGCTGTGCTTATAGCGTTATATCCTCTCAACAAAACCCCAGGATGTTATGCGCTTGCTCAATC
GGCAGAAATAGAAAGAGGAGGTGCATTGTTTAGTCACGCTTGCATTGGCTGCCATGATGCTGGGGGAAACATAATTCAACCCGGTGCGACGCTCTTTTCAAGTGATCTTG
AAAGAAACGGAGCTGATTCTGAAGAGGAGATTTACCAAATTACATATTACGGGAAAGGAAGAATGCCTGGTTTCGGTGAAAACTGCAAGCCAAGGGGTCAGTGCACATTT
GGTCCCCGTTTGCAGGAGGAAGAGATTAGGGTTTTGGCGAAGTTTGTAAAGATACAGGCTGATCGGGGGTGGCCAAACCCATAGATGCCGATTGATTTTTGCGCCAGAAT
ATTATGCATTGGTTACCAGTTTATAATTTATATTAACATTGTATATAATTCTCCCAAATCCCTCTCTGAATCCATGGCCTTAGGCATGGATCATGTCATCTGGAGAACTA
GAATGGATTGCTGCGATTACTCTTGTGATAAATGGCAATGTTTAAACACTGTAAGCCTGCCGTCTGTTTCTGAAACTTGATATCCACACTTTGCTATTGCACAAGAAATG
ATCATAAAACAAACGACTCACTAAAATGCTCCAATTTCAAAGTTTTGAATTACATGAATGTATCTGCCAATGGAACAATGAAAAGTATACCGATGCATTTGT
Protein sequenceShow/hide protein sequence
MRRQVKILKTLAPPLIAVLIALYPLNKTPGCYALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITYYGKGRMPGFGENCKPRGQCTF
GPRLQEEEIRVLAKFVKIQADRGWPNP