; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg14950 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14950
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein-associated protein
Genome locationCarg_Chr07:266340..267182
RNA-Seq ExpressionCarg14950
SyntenyCarg14950
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071004 - U2-type prespliceosome (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR017131 - Small ribonucleoprotein associated, SmB/SmN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134546.1 small nuclear ribonucleoprotein-associated protein B' [Cucumis sativus]4.2e-13995.77Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAP+IRPPGQMPMFPGQ PPP+GRGM    PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_008439504.1 PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B' [Cucumis melo]1.1e-13996.48Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAPVIRPPGQMPMFPGQ PPP+GRGM    PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_022926621.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita moschata]3.3e-144100Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG

Query:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

XP_023003040.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita maxima]8.5e-14099.28Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG

Query:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
        GAPPQPFPG PQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGG VPVYGPPRPGMPPPPNPQNQQQ
Subjt:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

XP_023517736.1 small nuclear ribonucleoprotein-associated protein B'-like [Cucurbita pepo subsp. pepo]1.3e-14399.64Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG

Query:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQ QNQQQ
Subjt:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

TrEMBL top hitse value%identityAlignment
A0A0A0KPA9 Small nuclear ribonucleoprotein-associated protein2.0e-13995.77Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAP+IRPPGQMPMFPGQ PPP+GRGM    PPPQFS 
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A1S3AZK2 Small nuclear ribonucleoprotein-associated protein5.4e-14096.48Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAPVIRPPGQMPMFPGQ PPP+GRGM    PPPQFSA
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSA

Query:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  ARPGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A5A7UAP6 Small nuclear ribonucleoprotein-associated protein4.5e-13996.45Show/hide
Query:  MSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
        MSKSSKMLQY+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA
Subjt:  MSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAA

Query:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSAAR
        MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPM+YPAAPVIRPPGQMPMFPGQ PPP+GRGM    PPPQFSAAR
Subjt:  MAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGM----PPPQFSAAR

Query:  PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGM  PPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  PGGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1EFE7 Small nuclear ribonucleoprotein-associated protein1.6e-144100Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG

Query:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
        GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ
Subjt:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ

A0A6J1KQN7 Small nuclear ribonucleoprotein-associated protein4.1e-14099.28Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
        AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPG

Query:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
        GAPPQPFPG PQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGG VPVYGPPRPGMPPPPNPQNQQQ
Subjt:  GAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

SwissProt top hitse value%identityAlignment
P14678 Small nuclear ribonucleoprotein-associated proteins B and B'1.1e-4651.89Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G  PPP+GRG PPP      P
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP

Query:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRP
        G  PP    GP      PMG PP      G PP   PGM PPPP    PPPPG       PPRP
Subjt:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRP

P17136 Small nuclear ribonucleoprotein-associated protein B1.9e-4652.46Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G  PPP+GRG PPP      P
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP

Query:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPP
        G  PP    GP      PMG PP      G PP   PGM PPPP
Subjt:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPP

P27048 Small nuclear ribonucleoprotein-associated protein B1.9e-4652.46Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G  PPP+GRG PPP      P
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP

Query:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPP
        G  PP    GP      PMG PP      G PP   PGM PPPP
Subjt:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPP

Q9N1Q0 Small nuclear ribonucleoprotein-associated protein B'3.3e-4651.14Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   +
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP
         A  GPGIGRAAGRG+P   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G  PPP+GRG PPP   A  P
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP

Query:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRP
        G  PP    GP      P G PP      G PP   PGM PPPP    PPPPG       PPRP
Subjt:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRP

Q9TU67 Small nuclear ribonucleoprotein-associated protein B'1.1e-4651.89Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        M++ KSSKMLQ+++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P   K+   ER+E+R LGLVLLRGE ++SMTVEGPPP +   A+   A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP
         A  GPGIGRAAGRGIP   P+ QA  GLAGPVRGVGGP+  +M PQ         +A   S   AP   PPG+     G  PPP+GRG PPP      P
Subjt:  AAMAGPGIGRAAGRGIPT-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP

Query:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRP
        G  PP    GP      PMG PP      G PP   PGM PPPP    PPPPG       PPRP
Subjt:  GGAPPQPFPGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRP

Arabidopsis top hitse value%identityAlignment
AT4G20440.1 small nuclear ribonucleoprotein associated protein B3.0e-9576.87Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQG PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA

Query:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP     PPPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.2 small nuclear ribonucleoprotein associated protein B3.0e-9576.87Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQG PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA

Query:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP     PPPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.3 small nuclear ribonucleoprotein associated protein B3.0e-9576.87Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQG PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA

Query:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP     PPPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT4G20440.4 small nuclear ribonucleoprotein associated protein B3.0e-9576.87Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA
        MSMSKSSKMLQ++NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK NEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKA +A
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNA

Query:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA
        AA+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP  PQLSAP       P+IRPPGQM   P F GQG PP+GRG PPP     
Subjt:  AAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQM---PMFPGQGPPPVGRGMPPPQFSAA

Query:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ
        RP   PPQ F  P PPQ+ QRPM PPP G +MRGPPPPP     PPPPRPGMPP PGG    + PPRPGMP    P NQQQ
Subjt:  RPGGAPPQPF--PGPPQFAQRPMGPPPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQ

AT5G44500.1 Small nuclear ribonucleoprotein family protein5.2e-8771.43Show/hide
Query:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN
        MSMSKSSKMLQ++NYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG KKTNEER+ERRTLGLVLLRGEEVISMTVEGPPP EESRAK+ +
Subjt:  MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVN

Query:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP
          A+AGPGIGRAAGRG+PT PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP               +IRPPGQMP      PP  G+G PPP +     
Subjt:  AAAMAGPGIGRAAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARP

Query:  GGAPPQPFPGPPQFA--QRPMGPPPTGQVMRGPPPPPRPGM-APPPPRPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ
        G  PP P P PPQ+   QRPM  PP G +MRGPPPP   GM  PPP RPGMPPP  G  P++ PP PGMPP PPN  NQQ
Subjt:  GGAPPQPFPGPPQFA--QRPMGPPPTGQVMRGPPPPPRPGM-APPPPRPGMPPPPGGAVPVYGPPRPGMPP-PPNPQNQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCA
TATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTC
TACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGT
GCCGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCCCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTC
CGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCT
CCACCAACAGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGT
TTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGTCTAAGAGCTCCAAGATGCTCCAGTACGTTAATTATCGGATGAGGGTCACGATCCAAGATGGGCGCCAATTGGTGGGCAAGTTCATGGCCTTCGATCGGCA
TATGAACCTCGTCCTCGGCGACTGCGAGGAGTTCCGTAAGCTTCCGCCGGCTAAGGGTAAAAAGACTAATGAGGAACGTGACGAACGTCGTACCCTTGGCCTCGTTCTTC
TACGCGGCGAAGAGGTAATTTCCATGACAGTTGAGGGTCCACCGCCTGCTGAAGAGTCCCGTGCTAAAGCCGTCAATGCTGCTGCTATGGCTGGGCCTGGTATTGGCCGT
GCCGCTGGGAGAGGTATCCCGACTGCTCCTCTTGTTCAAGCTCAGCCTGGTCTTGCTGGACCAGTTCGTGGAGTGGGCGGACCCGCTCCGGGGATGATGCAGCCTCAAAT
CTCTCGCCCGCCAGTACCCCAGCTTTCGGCTCCGCCGATGTCATATCCGGCTGCCCCCGTTATCCGTCCACCTGGTCAGATGCCGATGTTTCCTGGGCAAGGTCCACCTC
CGGTTGGGAGAGGTATGCCTCCACCTCAATTCTCGGCAGCGAGACCAGGGGGAGCCCCTCCACAACCATTCCCAGGTCCTCCTCAATTTGCGCAGAGACCAATGGGACCT
CCACCAACAGGGCAAGTGATGAGGGGACCGCCACCTCCACCCAGGCCTGGAATGGCACCTCCCCCGCCTCGACCTGGGATGCCTCCTCCGCCTGGTGGCGCAGTTCCTGT
TTACGGACCACCTCGTCCTGGCATGCCGCCTCCGCCCAACCCACAAAATCAGCAGCAAAATCAACAGCAATAG
Protein sequenceShow/hide protein sequence
MSMSKSSKMLQYVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGR
AAGRGIPTAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYPAAPVIRPPGQMPMFPGQGPPPVGRGMPPPQFSAARPGGAPPQPFPGPPQFAQRPMGP
PPTGQVMRGPPPPPRPGMAPPPPRPGMPPPPGGAVPVYGPPRPGMPPPPNPQNQQQNQQQ