CuGenDBv2

Gene ID	Carg15050
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1
Genome location	Carg_Chr16:254966..257708
RNA-Seq Expression	Carg15050
Synteny	Carg15050
Gene Ontology terms	GO:0042793 - plastid transcription (biological process) GO:0000427 - plastid-encoded plastid RNA polymerase complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR038958 - Protein plastid transcriptionally active 7

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576638.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-85

98.21

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Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASP   RIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

KAG7014690.1 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 [Cucurbita argyrosperma subsp. argyrosperma]

5.3e-89

100

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Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

XP_022923077.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita moschata]

7.7e-88

98.81

Show/hide

Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPLFQRIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

XP_022984516.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1 [Cucurbita maxima]

4.5e-88

98.81

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Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MT+PIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

XP_023553427.1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7 isoform X1 [Cucurbita pepo subsp. pepo]

7.7e-88

98.21

Show/hide

Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQ+AARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAK+YVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1E559 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

3.7e-88

98.81

Show/hide

Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASPLFQRIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

A0A6J1E563 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

2.0e-81

93.37

Show/hide

Query:  TPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNR
        T IP+LSFASPL QRI+ R GISHGFN PPRLQVAARKQ +GEGVGRRVWRRRKLTKKD+MSIFKM+RIPFLEEQVRKVKEQGKLITMDIERLLLSEDNR
Subjt:  TPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNR

Query:  FDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        FDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  FDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

A0A6J1E8L1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2

8.6e-85

97.02

Show/hide

Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MTTPIPTLSFASP   RIQTRAG+SHGFNFP RLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

A0A6J1J2D6 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X2

5.0e-85

97.02

Show/hide

Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MT+PIPTLSFASP   RIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

A0A6J1J5H1 protein PLASTID TRANSCRIPTIONALLY ACTIVE 7-like isoform X1

2.2e-88

98.81

Show/hide

Query:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
        MT+PIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKD+MSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED
Subjt:  MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSED

Query:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
Subjt:  NRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

SwissProt top hits

e value

%identity

Alignment

Q8VZV9 Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7

4.7e-48

62.96

Show/hide

Query:  TLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV
        T S  S +   I TR+G         + QV+   QRD    GRRVWRRR LTKKDDM  +KM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FV
Subjt:  TLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV

Query:  NEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        N VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  NEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

Arabidopsis top hits

e value

%identity

Alignment

AT5G24314.1 plastid transcriptionally active7

3.4e-49

62.96

Show/hide

Query:  TLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV
        T S  S +   I TR+G         + QV+   QRD    GRRVWRRR LTKKDDM  +KM R+PF+EEQVRK++E GK++TMDIE+LLL EDNRF+FV
Subjt:  TLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFV

Query:  NEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        N VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  NEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

AT5G24314.2 plastid transcriptionally active7

5.4e-47

Show/hide

Query:  TLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRK--------LTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLS
        T S  S +   I TR+G         + QV+   QRD    GRRVWRRR         LTKKDDM  +KM R+PF+EEQVRK++E GK++TMDIE+LLL 
Subjt:  TLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRK--------LTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLS

Query:  EDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT
        EDNRF+FVN VAAEA EYV+ NRDEYGGSKKAI HVLSNRVND GF RP+AY E DP+KPGP YL + +T
Subjt:  EDNRFDFVNEVAAEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTACTCCAATCCCGACACTCTCCTTCGCTTCACCTTTGTTTCAGAGGATACAGACGAGGGCGGGAATTTCTCATGGATTTAACTTTCCTCCGCGGTTACAGGTGGC
CGCCAGAAAGCAAAGAGATGGTGAGGGTGTCGGTCGGCGAGTGTGGCGACGAAGAAAATTGACGAAGAAGGATGACATGTCGATCTTCAAAATGGATCGAATCCCATTCC
TTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTCATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTCGTGAACGAGGTTGCA
GCGGAGGCTAAGGAATACGTGGAGAACAATCGTGATGAATATGGGGGTTCCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGACC
GGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTCATTATCTCAAACAAGAATTTACTTGA

mRNA sequence

Show/hide mRNA sequence

CATTGTTGTTGATTTCTTTAAGAAATATTCCTTACAAATTAAGCAATAGAAATGGGGATTCAAACCGAAGGCTTGTTTCAACTTCACTCTCAATCCCGAGTGAAAACTGG
AATAGGGCTAACATTTTAACTAAAACTGGAATAGGGCTAAATAAGTGATAACTTAGTAGAGGACATCTTTCTTGAAATTTTGAGGAGATGGGTTATTTATCCAAAAAATC
CTACGCTTCGAAAAGAAAAACTCGTCGTCTCGTCTGTAAATATCATCCGAAGGTGAAGATAGGACAGCGATGACTACTCCAATCCCGACACTCTCCTTCGCTTCACCTTT
GTTTCAGAGGATACAGACGAGGGCGGGAATTTCTCATGGATTTAACTTTCCTCCGCGGTTACAGGTGGCCGCCAGAAAGCAAAGAGATGGTGAGGGTGTCGGTCGGCGAG
TGTGGCGACGAAGAAAATTGACGAAGAAGGATGACATGTCGATCTTCAAAATGGATCGAATCCCATTCCTTGAAGAACAGGTAAGGAAGGTAAAGGAACAGGGGAAGCTC
ATAACAATGGACATCGAAAGACTTCTGCTATCAGAGGACAACCGCTTCGATTTCGTGAACGAGGTTGCAGCGGAGGCTAAGGAATACGTGGAGAACAATCGTGATGAATA
TGGGGGTTCCAAGAAAGCCATCCTTCATGTTCTTAGCAACCGAGTGAACGATGCAGGGTTCTATCGACCGGATGCATATGCAGAAGAGGACCCATTTAAACCCGGACCTC
ATTATCTCAAACAAGAATTTACTTGAACAACCTTATTACAATATCCATTTTCCTATACAAACTTGGTCTATGTAGTAATTTGGTTTACCTACCCTGTTGTTGTATGTTCG
CTACTGCATATTTCTCTAGTGATTAAGAATCCTGCTTGCATTTTACTTACAATTGAGAAGGAATGGCACTACATAAGCAGAGAATATAATGCAAATATTTGCTGCTTTCC
TCTGACTAACTTCTCTTTACTTCTCTGTGGTTGAAACAAATTGTAATATATGGGCTTTTGAGAAATGTTATAATTATAATTATTTCAAAATTAAATGATTTCTTCTAAGC
ATGTGGGCTTCGGATCTCATCTGATCCAATTTCTGGATGGATTTTAGGCCTTCAATGATTTGAATGGGCCGCATATGGGCTTCGGATCTCATCTGGTCCAATTCCATCCG
AAGATGTGTCTGTCTGTCGTGACAAGTGAACAAGAACGCGAGTATCTTGGTTTCTCATACTCTCAAGAAACACCAATTCATTTGTATGTTTCTCTTTTATTACTATAAAT
ATAATCTTGATT

Protein sequence

Show/hide protein sequence

MTTPIPTLSFASPLFQRIQTRAGISHGFNFPPRLQVAARKQRDGEGVGRRVWRRRKLTKKDDMSIFKMDRIPFLEEQVRKVKEQGKLITMDIERLLLSEDNRFDFVNEVA
AEAKEYVENNRDEYGGSKKAILHVLSNRVNDAGFYRPDAYAEEDPFKPGPHYLKQEFT

Carg15050 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome