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Carg15191 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15191
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptiontRNA pseudouridine synthase
Genome locationCarg_Chr10:1620056..1622783
RNA-Seq ExpressionCarg15191
SyntenyCarg15191
Gene Ontology termsGO:0031119 - tRNA pseudouridine synthesis (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR001406 - Pseudouridine synthase I, TruA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7023337.1 hypothetical protein SDJN02_14362, partial [Cucurbita argyrosperma subsp. argyrosperma]8.9e-56100Show/hide
Query:  MDCQVMIINDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNTDRVGRCVCVELVGCQLLLAEVQPIIMERNVRMTLQMVRV
        MDCQVMIINDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNTDRVGRCVCVELVGCQLLLAEVQPIIMERNVRMTLQMVRV
Subjt:  MDCQVMIINDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNTDRVGRCVCVELVGCQLLLAEVQPIIMERNVRMTLQMVRV

Query:  LVATAIREAVAGA
        LVATAIREAVAGA
Subjt:  LVATAIREAVAGA
TYK28521.1 tRNA pseudouridine synthase A [Cucumis melo var. makuwa]1.2e-1581.13Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        +DAETPLIY  AELNRA+VKD TGRWARA FKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
XP_008453520.1 PREDICTED: tRNA pseudouridine synthase A [Cucumis melo]1.2e-1581.13Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        +DAETPLIY  AELNRA+VKD TGRWARA FKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
XP_022135239.1 uncharacterized protein LOC111007251 isoform X1 [Momordica charantia]3.1e-1683.02Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        NDAE PLIY  +ELNRASVKD TGRWARATFKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
XP_022135240.1 uncharacterized protein LOC111007251 isoform X2 [Momordica charantia]3.1e-1683.02Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        NDAE PLIY  +ELNRASVKD TGRWARATFKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
TrEMBL top hitse value%identityAlignment
A0A1S3BWI6 tRNA pseudouridine synthase5.7e-1681.13Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        +DAETPLIY  AELNRA+VKD TGRWARA FKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
A0A5A7UXE7 tRNA pseudouridine synthase5.7e-1681.13Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        +DAETPLIY  AELNRA+VKD TGRWARA FKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
A0A5D3DY63 tRNA pseudouridine synthase A5.7e-1681.13Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        +DAETPLIY  AELNRA+VKD TGRWARA FKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
A0A6J1C0L5 uncharacterized protein LOC111007251 isoform X21.5e-1683.02Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        NDAE PLIY  +ELNRASVKD TGRWARATFKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
A0A6J1C0W1 tRNA pseudouridine synthase1.5e-1683.02Show/hide
Query:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        NDAE PLIY  +ELNRASVKD TGRWARATFKIVLS+H  SF GWQKQPGLNT
Subjt:  NDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35400.1 Pseudouridine synthase family protein9.6e-0845.61Show/hide
Query:  MIINDAETPLIYYIAELNRASVKDG-TGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        ++ +D  T  +   +E   ++ KDG +GRW R  FKIVLS++  SF GWQKQP L+T
Subjt:  MIINDAETPLIYYIAELNRASVKDG-TGRWARATFKIVLSFHEVSFYGWQKQPGLNT
AT5G35400.2 Pseudouridine synthase family protein9.6e-0845.61Show/hide
Query:  MIINDAETPLIYYIAELNRASVKDG-TGRWARATFKIVLSFHEVSFYGWQKQPGLNT
        ++ +D  T  +   +E   ++ KDG +GRW R  FKIVLS++  SF GWQKQP L+T
Subjt:  MIINDAETPLIYYIAELNRASVKDG-TGRWARATFKIVLSFHEVSFYGWQKQPGLNT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTGCCAGGTCATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTGGGAGGTGGGCTAGGGC
AACATTTAAGATTGTTCTTTCCTTCCATGAGGTTTCTTTTTATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGACCGAGTAGGAAGATGTGTTTGTGTTGAGCTGGTTG
GTTGCCAATTGCTTCTTGCAGAAGTTCAGCCAATTATAATGGAACGTAATGTAAGGATGACCTTGCAGATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTT
GCTGGTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTGCCAGGTCATGATCATTAATGATGCCGAGACTCCATTGATTTACTACATAGCAGAGTTAAACAGAGCTTCAGTTAAAGATGGGACTGGGAGGTGGGCTAGGGC
AACATTTAAGATTGTTCTTTCCTTCCATGAGGTTTCTTTTTATGGGTGGCAAAAGCAGCCAGGCTTGAATACTGACCGAGTAGGAAGATGTGTTTGTGTTGAGCTGGTTG
GTTGCCAATTGCTTCTTGCAGAAGTTCAGCCAATTATAATGGAACGTAATGTAAGGATGACCTTGCAGATGGTACGGGTGCTTGTTGCGACAGCAATTAGAGAGGCAGTT
GCTGGTGCTTGA
Protein sequenceShow/hide protein sequence
MDCQVMIINDAETPLIYYIAELNRASVKDGTGRWARATFKIVLSFHEVSFYGWQKQPGLNTDRVGRCVCVELVGCQLLLAEVQPIIMERNVRMTLQMVRVLVATAIREAV
AGA