CuGenDBv2

Gene ID	Carg15219
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ribosome biogenesis protein
Genome location	Carg_Chr10:1736962..1739812
RNA-Seq Expression	Carg15219
Synteny	Carg15219
Gene Ontology terms	GO:0000462 - maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process) GO:0005730 - nucleolus (cellular component) GO:0030686 - 90S preribosome (cellular component) GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domains	IPR028160 - Ribosome biogenesis protein Slx9-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589685.1 hypothetical protein SDJN03_15108, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-69

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK           KLRRRKR LKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

KAG7023365.1 hypothetical protein SDJN02_14390 [Cucurbita argyrosperma subsp. argyrosperma]

6.4e-88

100

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Query:  MLVTRFKLSESLQVVIMGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQK
        MLVTRFKLSESLQVVIMGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQK
Subjt:  MLVTRFKLSESLQVVIMGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQK

Query:  TSDTELKVNCKSRLKLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
        TSDTELKVNCKSRLKLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  TSDTELKVNCKSRLKLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_022922102.1 putative ribosome biogenesis protein slx9-like [Cucurbita moschata]

3.9e-69

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKR LKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_022987345.1 putative ribosome biogenesis protein slx9-like [Cucurbita maxima]

5.1e-69

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKR LKAFDLTALSEFLPGLK PKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

XP_023515417.1 putative ribosome biogenesis protein slx9-like [Cucurbita pepo subsp. pepo]

8.6e-69

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKR LKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEE KKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L113 Uncharacterized protein

1.5e-55

76.65

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKP SRSD KSKAERKFEKK+QFYERVGETI TLNAQK+ITK         +K  RRRKR LKAFDL+ LSEFLPGL+A KQK S  ELK+NCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKE KQMGTVLNHP FQADPL A+ LHLE TQP+EE KKKK N+NGSKKRKEKKSKA+AKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

A0A6J1CYW4 putative ribosome biogenesis protein slx9-like isoform X1

5.9e-55

76.36

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K ++        K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM
         LKE KQMGTVLNHPAFQADPL AIHLHLESTQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM

A0A6J1CZB1 putative ribosome biogenesis protein slx9-like isoform X2

5.9e-55

76.97

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKP SRSDSKSKAERKF+KK+QFYERVGET+  LNAQKTI+K S         K R RK+ LKAFDLT LSEFLPGL+APKQK+S  ELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM
         LKE KQMGTVLNHPAFQADPL AIHLHLESTQPVEE KKK TN+NGSKKRKEKK KA+A P  M
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSM

A0A6J1E5M8 putative ribosome biogenesis protein slx9-like

1.9e-69

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKR LKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHL+STQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

A0A6J1JDX4 putative ribosome biogenesis protein slx9-like

2.4e-69

91.62

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-
        MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITK          KKLRRRKR LKAFDLTALSEFLPGLK PKQKTSDTELKVNCKSRLK 
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNCKSRLK-

Query:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
         LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM
Subjt:  -LKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G01640.1 unknown protein

9.9e-31

52.2

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK
        MGKP+  S+  +K+++KFEKK+QFY +V +T+ +L+ QK I K         +KK+R R++ LKA+DLT LSEFLP   A  K      ELK+NCK R K
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK

Query:  --LKETKQMGTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK
          L E +++  VL+HPAFQADP+G+I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  --LKETKQMGTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK

AT2G01640.2 unknown protein

9.9e-31

52.2

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Query:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK
        MGKP+  S+  +K+++KFEKK+QFY +V +T+ +L+ QK I K         +KK+R R++ LKA+DLT LSEFLP   A  K      ELK+NCK R K
Subjt:  MGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKA-PKQKTSDTELKVNCKSRLK

Query:  --LKETKQMGTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK
          L E +++  VL+HPAFQADP+G+I  HL S Q PVEE  KKKTN NGSKKR +KK K
Subjt:  --LKETKQMGTVLNHPAFQADPLGAIHLHLESTQ-PVEETKKKKTNRNGSKKRKEKKSK

Sequences

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CDS sequence

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ATGCTCGTAACCAGATTCAAGTTATCAGAAAGCTTGCAAGTTGTAATTATGGGCAAACCAACCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGCAAATTTGAAAAGAA
GATACAATTCTATGAGAGAGTTGGTGAAACTATTGCTACCTTAAATGCTCAAAAGACTATTACTAAGTATTCTGCTGAAATTGAGTACATTTTACAGAAGAAGCTTCGAA
GACGTAAAAGGGGTTTGAAGGCTTTCGATCTTACTGCTCTATCAGAATTTCTTCCTGGATTGAAGGCTCCCAAACAAAAAACTTCTGACACCGAGTTAAAAGTAAATTGC
AAGTCTAGGCTAAAATTGAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGCATTCCAGGCAGATCCCTTGGGAGCTATTCATCTACATTTAGAGAGCACACA
ACCAGTTGAGGAAACGAAGAAAAAGAAGACGAACAGAAATGGGAGCAAGAAAAGGAAAGAGAAAAAGTCCAAAGCCACTGCAAAACCTTCATCTATGGAGATGTGA

mRNA sequence

Show/hide mRNA sequence

AAAACTGGAGAAACCGCGCAAACCCTACTTCATCTCTAGTGGCCGCCGATTTCCCGCTCGTGGTCGCCTGCTTGTGGTCGCCGATTACCTCCGGGAGTAAATGCTCGTAA
CCAGATTCAAGTTATCAGAAAGCTTGCAAGTTGTAATTATGGGCAAACCAACCTCTCGGTCGGATTCGAAATCTAAAGCCGAACGCAAATTTGAAAAGAAGATACAATTC
TATGAGAGAGTTGGTGAAACTATTGCTACCTTAAATGCTCAAAAGACTATTACTAAGTATTCTGCTGAAATTGAGTACATTTTACAGAAGAAGCTTCGAAGACGTAAAAG
GGGTTTGAAGGCTTTCGATCTTACTGCTCTATCAGAATTTCTTCCTGGATTGAAGGCTCCCAAACAAAAAACTTCTGACACCGAGTTAAAAGTAAATTGCAAGTCTAGGC
TAAAATTGAAGGAAACAAAGCAAATGGGTACAGTTCTTAATCACCCTGCATTCCAGGCAGATCCCTTGGGAGCTATTCATCTACATTTAGAGAGCACACAACCAGTTGAG
GAAACGAAGAAAAAGAAGACGAACAGAAATGGGAGCAAGAAAAGGAAAGAGAAAAAGTCCAAAGCCACTGCAAAACCTTCATCTATGGAGATGTGACTTATCTCTCATCG
GCTTTCTTTTGCCATAGTAAGCCTATAGCTTTTGTTTCACCCCAGAAGTTTGTTCGGACTTAACTCTTCGACTAAGAGGTAAGAAGTTCAAATTGTCAGCTCGATCTTGC
TTTCTTAATTTTGATTATAAGAACCCCTAGAATTCATGGGTGGGTGAGAGTGGTTCTTTCAATTTTTCCTTCGACTAAGAGGTAAGAAAGTGGAAGTTGATAACTATGAA
TGAATGAACTCATATCAAGCAAAAATGAGTTCAATACCATTTGGAATATTTATTTATCAAGTGCAAAATCTTGGATTGGTATTTTCCTTGGACCAAATAGGAACCATGCT
TGTTCCTTGAAACATCTTTCACTCCATCTCTCTTTGGTTATGAGATCTTGCCTCATTAGTTCCGAGCTCCGAGATCAACGGTAATCAAATCTTTCCTGTTCTCAATTAAA
TCAACTTTGTTCATACATGATATTCGCTTTTGTTTTGGGTGTGTTTATGCTTCTATTTGTATTGATCCGTAACAGCATAAGCTAGTAAATATTGTTCGTTACATATTGTT
CAATCTCACGGTTTTAAAACACATCTGCTATGGAGAAGTTTCCATATTCTTAGACGTAGTGTATAGCTTAAGGCCATATAATTTACCCTTACCATTATTGACATCGTGAC
ATCGCAACGGTGGTTTAATTAATAAGAAATCATGCTTCCACGTTTTAATCAACCTGCCTTTCATCCTCTAGAATGTGAATC

Protein sequence

Show/hide protein sequence

MLVTRFKLSESLQVVIMGKPTSRSDSKSKAERKFEKKIQFYERVGETIATLNAQKTITKYSAEIEYILQKKLRRRKRGLKAFDLTALSEFLPGLKAPKQKTSDTELKVNC
KSRLKLKETKQMGTVLNHPAFQADPLGAIHLHLESTQPVEETKKKKTNRNGSKKRKEKKSKATAKPSSMEM

Carg15219 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome