; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg15239 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15239
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionreplication protein A 32 kDa subunit B
Genome locationCarg_Chr10:1854207..1858226
RNA-Seq ExpressionCarg15239
SyntenyCarg15239
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]5.8e-157100Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

KAG7023385.1 Replication protein A 32 kDa subunit B [Cucurbita argyrosperma subsp. argyrosperma]5.8e-157100Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

XP_022922070.1 replication protein A 32 kDa subunit B-like isoform X1 [Cucurbita moschata]1.7e-15699.64Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTG+ID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

XP_022988280.1 replication protein A 32 kDa subunit B [Cucurbita maxima]6.4e-15699.28Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTP+SN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHL VPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

XP_023516911.1 replication protein A 32 kDa subunit B-like isoform X1 [Cucurbita pepo subsp. pepo]8.3e-15699.28Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QY+GQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHL VPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

TrEMBL top hitse value%identityAlignment
A0A1S4DZE3 replication protein A 32 kDa subunit B-like1.4e-14894.22Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKSNFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQSSSMT QPQM NLSNTPV+GYQ PI+N
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ L VPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

A0A5D3CIS3 Replication protein A 32 kDa subunit B-like1.4e-14894.22Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MY SQFDGNAAFSGGGFMPSQTT APDHS SPAKNRDVQALLPLTVKQINDAFLSSDDKSNFV+DGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEIT+HFIESIYVHFYNTRLRKQQSSSMT QPQM NLSNTPV+GYQ PI+N
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGD WK+LEQMVLDFLQLPSCD+ERGAHRDVIAQ L VPLEKL+PAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

A0A6J1E235 replication protein A 32 kDa subunit B-like isoform X27.6e-15599.28Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTG+ID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR QQSSSMTPQPQMANLSNTPVRGYQTPISN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

A0A6J1E347 replication protein A 32 kDa subunit B-like isoform X18.1e-15799.64Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTG+ID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

A0A6J1JJ51 replication protein A 32 kDa subunit B3.1e-15699.28Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN
        CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTP+SN
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
        QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHL VPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

SwissProt top hitse value%identityAlignment
Q6H7J5 Replication protein A 32 kDa subunit B4.4e-5138.75Show/hide
Query:  GSQFDG-----NAAFSGGGFMPSQTTMAPDHSLSPA----KNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALD
        G  +DG     ++ F GGGFMPSQ T A + +        K+R+ QALLPLTVKQI DA  ++DDKSNF V+G++V+ V+LVG + N+  R+TDV+F LD
Subjt:  GSQFDG-----NAAFSGGGFMPSQTTMAPDHSLSPA----KNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALD

Query:  DGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRG
        DGTGR+  ++W N++ D+ E+  I +G YV V+G LK FQGKR +  +S+R +T++N++T HF+  ++VH   TR + Q +++         +    +  
Subjt:  DGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRG

Query:  YQTPISNQYT----GQAGGDGWKNLEQMVLDFLQLPS-CDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG
         Q+P++NQ +     Q  G G  N+  +VL+    P+  + + G   D +++ LN+P E +   + +  + G +Y+T DD+H+KST NG
Subjt:  YQTPISNQYT----GQAGGDGWKNLEQMVLDFLQLPS-CDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG

Q6K9U2 Replication protein A 32 kDa subunit A5.8e-4339.78Show/hide
Query:  AFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDA---FLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNE
        AFS   F  SQ   A   S +P+K+R   + +PLTVKQI++A    ++ +  + FVVDGV+  NV+LVG+V  +  R TDV+F +DDGTGR+D  +WVN+
Subjt:  AFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDA---FLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNE

Query:  AADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPI---SNQYTG
         ADS E   + +GMYV V G LK  Q ++    F+IRPVTDYNE+T HFI+ + +H  NT  + Q  S       M + S+       TP    SN    
Subjt:  AADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPI---SNQYTG

Query:  QAGGDGWK-NLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN
         +  +G K +L   VL+  + P + ++E G H D I +   +P  K+  A+  L + G IYST D+ H+KS  N
Subjt:  QAGGDGWK-NLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN

Q8LFJ8 Replication protein A 32 kDa subunit B3.0e-7150.36Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYG  FDGNAAF+GGGFMPSQ T     S S  KNRDV+ LLPLT+KQ++ A  S+  +SNF +DGVD+  V +VG +     RIT V F +DDGTG +D
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR--KQQSSSMTPQPQMA-NLSNTPVRGYQTP
        C +W +   ++ E+E +  GMYVR+HGHLK FQGKR++NVFS+RPVTD+NEI  HF E +YVH YNT+LR       + TP+PQM  +   TP + YQT 
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR--KQQSSSMTPQPQMA-NLSNTPVRGYQTP

Query:  ISNQYTGQAGGDGWKNLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN
         SNQ+  Q   D    ++Q VL++L  P    +E G H D+IA+ L +PL ++  A++ L  +G IYST D+  FKSTAN
Subjt:  ISNQYTGQAGGDGWKNLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN

Q92373 Replication factor A protein 29.3e-2531.83Show/hide
Query:  YGSQFDGNAAFS---GGGFMPSQTTMAPDHSLSPAKNRDVQA---LLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDG
        YG  F  N+AFS   GGG   ++     D S  P+ +R   A   L P+T+KQI +A     D + F +DGV+V  V  VG++RN   + T+ T+ ++DG
Subjt:  YGSQFDGNAAFS---GGGFMPSQTTMAPDHSLSPAKNRDVQA---LLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDG

Query:  TGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQ
        TG I+   W +  A S     +    YVRV+G++K F GK  +    IR + D+NE+  HF+E+I VH +            T +    N +N P  GY 
Subjt:  TGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQ

Query:  TPISNQYTGQAGGDGWKNLEQMVLDFLQLP-----------SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKS
        T  +  Y   +      +LEQ + ++   P           + +T  G H   +AQ +   ++ L      L++EG+IY+T D+ HFKS
Subjt:  TPISNQYTGQAGGDGWKNLEQMVLDFLQLP-----------SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKS

Q9ZQ19 Replication protein A 32 kDa subunit A1.7e-6647.62Show/hide
Query:  SQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCS
        SQF+ N+ FSGGGFM SQ + A + S S AKNRD Q L+P+TVKQI + F SS +KS  V++G+ + NV LVG+V ++   ++T+V F LDDGTGRIDC 
Subjt:  SQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCS

Query:  KWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTP--QPQMANLSNTPVRGYQTPISN
        +WV+E  D+ E+E + DG YVR+ GHLK+FQGK  L VFS+RP+ D+NE+T H+IE I+ +  N+  ++QQ   +T          SNT       P+ +
Subjt:  KWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTP--QPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDT-ERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFK
               G+G KNL+ M+LD+L+ P+C   ++G H D IAQ L +P  KL   +++LE +GLIYST D+YHFK
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDT-ERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A21.2e-6747.62Show/hide
Query:  SQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCS
        SQF+ N+ FSGGGFM SQ + A + S S AKNRD Q L+P+TVKQI + F SS +KS  V++G+ + NV LVG+V ++   ++T+V F LDDGTGRIDC 
Subjt:  SQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCS

Query:  KWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTP--QPQMANLSNTPVRGYQTPISN
        +WV+E  D+ E+E + DG YVR+ GHLK+FQGK  L VFS+RP+ D+NE+T H+IE I+ +  N+  ++QQ   +T          SNT       P+ +
Subjt:  KWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTP--QPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDT-ERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFK
               G+G KNL+ M+LD+L+ P+C   ++G H D IAQ L +P  KL   +++LE +GLIYST D+YHFK
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDT-ERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFK

AT2G24490.2 replicon protein A21.2e-6747.62Show/hide
Query:  SQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCS
        SQF+ N+ FSGGGFM SQ + A + S S AKNRD Q L+P+TVKQI + F SS +KS  V++G+ + NV LVG+V ++   ++T+V F LDDGTGRIDC 
Subjt:  SQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNR-AGRITDVTFALDDGTGRIDCS

Query:  KWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTP--QPQMANLSNTPVRGYQTPISN
        +WV+E  D+ E+E + DG YVR+ GHLK+FQGK  L VFS+RP+ D+NE+T H+IE I+ +  N+  ++QQ   +T          SNT       P+ +
Subjt:  KWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTP--QPQMANLSNTPVRGYQTPISN

Query:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDT-ERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFK
               G+G KNL+ M+LD+L+ P+C   ++G H D IAQ L +P  KL   +++LE +GLIYST D+YHFK
Subjt:  QYTGQAGGDGWKNLEQMVLDFLQLPSCDT-ERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFK

AT3G02920.1 Replication protein A, subunit RPA322.1e-7250.36Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID
        MYG  FDGNAAF+GGGFMPSQ T     S S  KNRDV+ LLPLT+KQ++ A  S+  +SNF +DGVD+  V +VG +     RIT V F +DDGTG +D
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRID

Query:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR--KQQSSSMTPQPQMA-NLSNTPVRGYQTP
        C +W +   ++ E+E +  GMYVR+HGHLK FQGKR++NVFS+RPVTD+NEI  HF E +YVH YNT+LR       + TP+PQM  +   TP + YQT 
Subjt:  CSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR--KQQSSSMTPQPQMA-NLSNTPVRGYQTP

Query:  ISNQYTGQAGGDGWKNLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN
         SNQ+  Q   D    ++Q VL++L  P    +E G H D+IA+ L +PL ++  A++ L  +G IYST D+  FKSTAN
Subjt:  ISNQYTGQAGGDGWKNLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN

AT3G02920.2 Replication protein A, subunit RPA328.3e-6947Show/hide
Query:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAK--------------------NRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRN
        MYG  FDGNAAF+GGGFMPSQ T     S S  K                    NRDV+ LLPLT+KQ++ A  S+  +SNF +DGVD+  V +VG +  
Subjt:  MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAK--------------------NRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRN

Query:  RAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR--KQQSSSMT
           RIT V F +DDGTG +DC +W +   ++ E+E +  GMYVR+HGHLK FQGKR++NVFS+RPVTD+NEI  HF E +YVH YNT+LR       + T
Subjt:  RAGRITDVTFALDDGTGRIDCSKWVNEAADSNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLR--KQQSSSMT

Query:  PQPQMA-NLSNTPVRGYQTPISNQYTGQAGGDGWKNLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN
        P+PQM  +   TP + YQT  SNQ+  Q   D    ++Q VL++L  P    +E G H D+IA+ L +PL ++  A++ L  +G IYST D+  FKSTAN
Subjt:  PQPQMA-NLSNTPVRGYQTPISNQYTGQAGGDGWKNLEQMVLDFLQLP-SCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTAN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGGGAGCCAATTTGATGGCAACGCTGCCTTCTCTGGTGGTGGATTTATGCCATCTCAGACCACCATGGCCCCTGATCATTCATTATCTCCGGCGAAGAATCGAGA
TGTCCAAGCATTGCTTCCGTTAACAGTGAAGCAGATAAACGACGCGTTTCTGTCTAGTGATGATAAATCAAATTTTGTTGTTGATGGTGTTGATGTTAATAATGTTAAGC
TTGTAGGGATGGTGCGCAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGATGATGGCACTGGACGGATTGACTGTAGCAAATGGGTCAATGAAGCTGCAGAT
TCAAATGAAGTTGAGGGAATATTGGATGGCATGTACGTCCGGGTCCATGGCCACTTAAAAAGCTTCCAGGGTAAAAGAACGTTAAATGTCTTTTCTATCAGGCCTGTGAC
GGACTATAATGAGATCACAAGTCACTTCATCGAATCCATATATGTTCATTTTTACAACACCAGATTACGGAAGCAACAAAGTAGTAGCATGACTCCTCAGCCACAGATGG
CAAATTTATCTAATACGCCTGTGAGAGGATATCAAACTCCCATTTCAAATCAATACACTGGTCAAGCAGGTGGAGATGGTTGGAAGAACCTTGAGCAAATGGTCTTAGAT
TTCTTGCAACTTCCTTCATGCGATACTGAGAGGGGCGCACACCGTGATGTGATTGCTCAACATCTCAATGTTCCACTAGAGAAGCTCATGCCGGCGATGAAAAATCTAGA
AGAGGAAGGCTTAATCTACTCAACAACTGATGATTACCACTTCAAATCAACCGCCAACGGATGA
mRNA sequenceShow/hide mRNA sequence
TATTTCTAGGTTTTACGGAAACATAATTTCATTTCGAAGACTGCTCTTCAATCTGTTTGCGATCAGTCACTTGATGCTCTTATAGGCTTTGAGTATTCTTCACTTGTAGA
GTTACAGTGGAAGAACGATGTACGGGAGCCAATTTGATGGCAACGCTGCCTTCTCTGGTGGTGGATTTATGCCATCTCAGACCACCATGGCCCCTGATCATTCATTATCT
CCGGCGAAGAATCGAGATGTCCAAGCATTGCTTCCGTTAACAGTGAAGCAGATAAACGACGCGTTTCTGTCTAGTGATGATAAATCAAATTTTGTTGTTGATGGTGTTGA
TGTTAATAATGTTAAGCTTGTAGGGATGGTGCGCAATAGAGCAGGAAGAATTACTGATGTGACTTTTGCACTGGATGATGGCACTGGACGGATTGACTGTAGCAAATGGG
TCAATGAAGCTGCAGATTCAAATGAAGTTGAGGGAATATTGGATGGCATGTACGTCCGGGTCCATGGCCACTTAAAAAGCTTCCAGGGTAAAAGAACGTTAAATGTCTTT
TCTATCAGGCCTGTGACGGACTATAATGAGATCACAAGTCACTTCATCGAATCCATATATGTTCATTTTTACAACACCAGATTACGGAAGCAACAAAGTAGTAGCATGAC
TCCTCAGCCACAGATGGCAAATTTATCTAATACGCCTGTGAGAGGATATCAAACTCCCATTTCAAATCAATACACTGGTCAAGCAGGTGGAGATGGTTGGAAGAACCTTG
AGCAAATGGTCTTAGATTTCTTGCAACTTCCTTCATGCGATACTGAGAGGGGCGCACACCGTGATGTGATTGCTCAACATCTCAATGTTCCACTAGAGAAGCTCATGCCG
GCGATGAAAAATCTAGAAGAGGAAGGCTTAATCTACTCAACAACTGATGATTACCACTTCAAATCAACCGCCAACGGATGACGTCTCTATCATGGCGTTACTAATGAATT
AAAGGCAAGTTTTATTTCCTGCCGTAAGAAACATTATTATCTCGAGTTTCATTAACTTTTTATACTTATTTTGACCGTGACAAATATTGTTCTCTCAAGTTCCCATTTAT
CTTCTCTTTCTCTCTCTGCAATTTAACCTCAACTTCACATGATTAACACTGAGAAAAGGCAACCAGAAACACAAATTCAAACACTCCCCGCCGAACTCTCTGCCAATCCC
CTTTTTTCTGTTCACTCTTCAGGGTGTAAATGTGTCGGGTCTGGTTATATTTTATGCAAATCCAACCTAGCTCGACTCGTGGATTTTTCCCAAGAGTTAGCACAGGTACA
TGAGCAAATTAAAAGTTCGAGGGGGGTCTGGAAAGAGGGTCGAAATGATAAATAATTGAATTTCGTATAATATATGCTTATTTTTCTTGTGTGAAAATATTTTTGGAAGA
ATTCCAAGCAATTTAGG
Protein sequenceShow/hide protein sequence
MYGSQFDGNAAFSGGGFMPSQTTMAPDHSLSPAKNRDVQALLPLTVKQINDAFLSSDDKSNFVVDGVDVNNVKLVGMVRNRAGRITDVTFALDDGTGRIDCSKWVNEAAD
SNEVEGILDGMYVRVHGHLKSFQGKRTLNVFSIRPVTDYNEITSHFIESIYVHFYNTRLRKQQSSSMTPQPQMANLSNTPVRGYQTPISNQYTGQAGGDGWKNLEQMVLD
FLQLPSCDTERGAHRDVIAQHLNVPLEKLMPAMKNLEEEGLIYSTTDDYHFKSTANG