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Carg15240 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15240
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionOxysterol-binding protein-related protein 4B-like
Genome locationCarg_Chr10:1860071..1860582
RNA-Seq ExpressionCarg15240
SyntenyCarg15240
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589706.1 hypothetical protein SDJN03_15129, partial [Cucurbita argyrosperma subsp. sororia]5.7e-6699.2Show/hide
Query:  MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKS
        MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKS
Subjt:  MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSKFGSPCKAKS

Query:  PTPAAESPGHWRFGCRPWRINPIKI
        PTPAAESPGHWRFGC PWRINPIKI
Subjt:  PTPAAESPGHWRFGCRPWRINPIKI

KAG7023386.1 hypothetical protein SDJN02_14411, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-83100Show/hide
Query:  MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKS
        MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKS
Subjt:  MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKS

Query:  NNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK
        NNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK
Subjt:  NNNSRPLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK

XP_004146363.1 uncharacterized protein LOC101210202 [Cucumis sativus]1.0e-3859.88Show/hide
Query:  MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ
        MKEE N    FVLPLD+FP+RNSSM RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E +   I PPP V+SL L KP   VQNKQP F+LF PWRKQ
Subjt:  MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ

Query:  --SKSNNNSRPLD----DHRSKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI
           K   N  PLD    + R +F            S CK KS  PA  S GHWR GC PWRINPIKI
Subjt:  --SKSNNNSRPLD----DHRSKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI

XP_023007086.1 uncharacterized protein LOC111499680 [Cucurbita maxima]1.3e-3353.33Show/hide
Query:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN
        E+ +  FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V + I PPP  +SL   KPA    KQ  FLLFRPWRKQSKS  
Subjt:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN

Query:  N---SRPLDDHRSKFG----------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI
        +   S   +D R++FG          SPC+ KS +       PAAES  H R GC PWRINP++I
Subjt:  N---SRPLDDHRSKFG----------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI

XP_023530969.1 uncharacterized protein LOC111793357 [Cucurbita pepo subsp. pepo]2.0e-3454.22Show/hide
Query:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN
        E+ +  FVLPLD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+  P  E V + I PPP  +SL   KPA  Q KQ  FLLFRPWRKQSKS  
Subjt:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN

Query:  N---SRPLDDHRSKFG----------SPCKAKSPT--------PAAESPGHWRFGCRPWRINPIKI
        +   S   +D RS+FG          SPC+ KS +        PAAES  H R GC PWRINP++I
Subjt:  N---SRPLDDHRSKFG----------SPCKAKSPT--------PAAESPGHWRFGCRPWRINPIKI

TrEMBL top hitse value%identityAlignment
A0A0A0LUL8 Uncharacterized protein4.9e-3959.88Show/hide
Query:  MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ
        MKEE N    FVLPLD+FP+RNSSM RSSR +YYRRT+EGVPFQWEM PGTPKN PPL E +   I PPP V+SL L KP   VQNKQP F+LF PWRKQ
Subjt:  MKEETNGG--FVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ

Query:  --SKSNNNSRPLD----DHRSKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI
           K   N  PLD    + R +F            S CK KS  PA  S GHWR GC PWRINPIKI
Subjt:  --SKSNNNSRPLD----DHRSKFG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI

A0A5D3CJV8 Oxysterol-binding protein-related protein 4B-like8.7e-2854.48Show/hide
Query:  MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ----SKSNNNSRPLD----DHRSK
        M RSSR +YYRRT+EGVPFQWEM PGTPK+ PPL E +P  I PPP V+SL   KP   VQNKQ  F+LF PWRKQ     K   N  PLD    + R +
Subjt:  MGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPA-TVQNKQPQFLLFRPWRKQ----SKSNNNSRPLD----DHRSK

Query:  FG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI
        F            S CK +S +P  ES G WR GC PWRINPIKI
Subjt:  FG-----------SPCKAKSPTPAAESPGHWRFGCRPWRINPIKI

A0A6J1EQV3 uncharacterized protein LOC1114366868.2e-3453.94Show/hide
Query:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN
        E+ +  FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V + I PPP  +SL   KPA    KQ  FLLFRPWRKQSKS  
Subjt:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN

Query:  NSRPLD---DHRSKFG----------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI
        +S   D   D R++FG          SPC+ KS +       PAAES  H R GC PWRINP++I
Subjt:  NSRPLD---DHRSKFG----------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI

A0A6J1KZJ1 uncharacterized protein LOC1114996806.3e-3453.33Show/hide
Query:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN
        E+ +  FVL LD+ P+R SS+G SSR YYYRRT+EGVPFQWEM PGTPK+ PP  E V + I PPP  +SL   KPA    KQ  FLLFRPWRKQSKS  
Subjt:  EETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNN

Query:  N---SRPLDDHRSKFG----------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI
        +   S   +D R++FG          SPC+ KS +       PAAES  H R GC PWRINP++I
Subjt:  N---SRPLDDHRSKFG----------SPCKAKSPT-------PAAESPGHWRFGCRPWRINPIKI

A0A7J9CW56 Uncharacterized protein3.0e-1238.41Show/hide
Query:  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKP---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK-
        +R+SS+G SSR YYY R+SEG+PF WEM PGTPK   P  E V   I PPP ++SL L KP      +NK  +  +F+ W K  + N+N + +DDH+S  
Subjt:  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKP---ATVQNKQPQFLLFRPWRKQSKSNNNSRPLDDHRSK-

Query:  ---------------FGSPCKA----------KSPTPAAESPGHWRFGCRP
                        GSPC +           S TP+ +S  +  +GC P
Subjt:  ---------------FGSPCKA----------KSPTPAAESPGHWRFGCRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G25845.1 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2)2.6e-0848.65Show/hide
Query:  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLF
        +RNSS+G     YY  R  EGVPF+WEM PGTP NT P  E VP  + PPP ++SL L KP ++  ++P+  +F
Subjt:  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLF

AT4G25850.2 OSBP(oxysterol binding protein)-related protein 4B2.6e-0848.65Show/hide
Query:  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLF
        +RNSS+G     YY  R  EGVPF+WEM PGTP NT P  E VP  + PPP ++SL L KP ++  ++P+  +F
Subjt:  TRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACT
TCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTG
GTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGT
CCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGG
AGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGAGGAGACAAACGGCGGATTTGTTCTGCCATTGGATAGTTTTCCGACGAGAAACTCATCTATGGGTCGTTCCTCTCGTTCGTACTACTACAGAAGGACT
TCTGAAGGGGTTCCGTTTCAGTGGGAGATGCTACCGGGGACCCCCAAGAATACTCCGCCGCTCGTGGAGCCGGTTCCAGTGCGCATCCGCCCGCCGCCGGTTGTG
GTCAGCCTTAGCCTCTTGAAGCCGGCCACGGTTCAGAATAAACAGCCGCAGTTTCTGTTATTTCGGCCGTGGAGGAAGCAGTCCAAGTCCAACAACAATTCTCGT
CCGTTGGATGACCATCGTTCGAAATTTGGATCTCCATGCAAAGCAAAATCTCCTACGCCGGCGGCGGAATCTCCCGGGCACTGGCGGTTTGGATGCCGTCCGTGG
AGGATCAACCCTATTAAAATAGATTTTGTAAATAAATAA
Protein sequenceShow/hide protein sequence
MKEETNGGFVLPLDSFPTRNSSMGRSSRSYYYRRTSEGVPFQWEMLPGTPKNTPPLVEPVPVRIRPPPVVVSLSLLKPATVQNKQPQFLLFRPWRKQSKSNNNSR
PLDDHRSKFGSPCKAKSPTPAAESPGHWRFGCRPWRINPIKIDFVNK