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Carg15261 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15261
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationCarg_Chr10:1956242..1959562
RNA-Seq ExpressionCarg15261
SyntenyCarg15261
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063999.1 small nuclear ribonucleoprotein E-like [Cucumis melo var. makuwa]5.9e-2675.86Show/hide
Query:  QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVL
        QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG NDDHPA+HIIEI F+      S Y  + F     N+L
Subjt:  QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVL
KAF3452842.1 hypothetical protein FNV43_RR03275 [Rhamnella rubrinervis]4.6e-1896.08Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGND
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGG D
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGND
KAF5956648.1 hypothetical protein HYC85_003873 [Camellia sinensis]1.7e-1767.12Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFY
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEEVNVKKK++K+LG N++       ++ F  I+ R+ F+
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFY
KAG7023407.1 Small nuclear ribonucleoprotein E [Cucurbita argyrosperma subsp. argyrosperma]2.2e-44100Show/hide
Query:  MQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVLIHR
        MQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVLIHR
Subjt:  MQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVLIHR
THG00211.1 hypothetical protein TEA_020644 [Camellia sinensis var. sinensis]1.7e-1792.31Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDD
        KARIQIWLFEQKD RIEGRIIGFDEYMNLVLDDAEEVNVKKK++KALG NDD
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDD
TrEMBL top hitse value%identityAlignment
A0A4S4DC80 Small nuclear ribonucleoprotein E8.4e-1892.31Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDD
        KARIQIWLFEQKD RIEGRIIGFDEYMNLVLDDAEEVNVKKK++KALG NDD
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDD
A0A5A7VEN8 Small nuclear ribonucleoprotein E2.9e-2675.86Show/hide
Query:  QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVL
        QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG NDDHPA+HIIEI F+      S Y  + F     N+L
Subjt:  QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVL
A0A5N6PMH9 Small nuclear ribonucleoprotein E8.4e-1886.79Show/hide
Query:  MQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGND
        +QKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE++VKKK++KALGGN+
Subjt:  MQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGND
A0A7J7HXJ5 Small nuclear ribonucleoprotein E8.4e-1867.12Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFY
        KARIQIWLFEQKDLRIEGRIIGFDEYMNLVL+DAEEVNVKKK++K+LG N++       ++ F  I+ R+ F+
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFY
W9QTF3 Small nuclear ribonucleoprotein E8.4e-1888.46Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDD
        KARIQIWLFEQKD+RIEGRIIGFDEYMNLVLDDAEEVN+KKKS+K+LG +DD
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDD
SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E3.5e-1370.83Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
A4FUI2 Small nuclear ribonucleoprotein E3.5e-1370.83Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
P62303 Small nuclear ribonucleoprotein E3.5e-1370.83Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
P62304 Small nuclear ribonucleoprotein E3.5e-1370.83Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
P62305 Small nuclear ribonucleoprotein E3.5e-1370.83Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.8e-1783.33Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
AT2G18740.2 Small nuclear ribonucleoprotein family protein1.8e-1783.33Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
AT4G30330.1 Small nuclear ribonucleoprotein family protein4.9e-1885.42Show/hide
Query:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LG
Subjt:  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTGACGAATACATGAATTTAGTTCTTGATGATGCTGA
GGAAGTTAATGTTAAGAAAAAGAGTAAAAAAGCACTCGGGGGAAATGATGATCATCCAGCAGACCACATTATTGAGATAGTTTTCACTTCCATCGTATGGCGTTATAGCT
TTTACAATCATCTTCCTTTTGGAGTTGTATCTTTCAACGTTTTAATCCATCGATGA
mRNA sequenceShow/hide mRNA sequence
CCTTTGATCACGGTGTCGCTGTATCTTTGGAGCTAGAACTTGATATTCAGATTTCTTCAAAGTGTAAGAACTTACTTTAATGCTTAATTATCTCACCTGTTTTTTTCTGG
CCTAACTCGGTTTTCTGGTTCGAGTTTGTAATCAATGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAAGACCTTAGGATCGAAGGCCGAATTATTGGATTTG
ACGAATACATGAATTTAGTTCTTGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGTAAAAAAGCACTCGGGGGAAATGATGATCATCCAGCAGACCACATTATTGAG
ATAGTTTTCACTTCCATCGTATGGCGTTATAGCTTTTACAATCATCTTCCTTTTGGAGTTGTATCTTTCAACGTTTTAATCCATCGATGATTAACGAGTTATTATTTGGA
TGTATAATGTTATTTTGCTGTTGGTAGATAATATCCTTTTATTCAACTCCTAATTTATCGTCCTTTCAACCGGTTGTTTATTCGTCCAATCCTTGAAATTATGGAACTAG
GGTTCCTCGAATCGTGAACTATAAATGGTGGAGCATCGTTTGAGAACGTCCGGTTTTTTTT
Protein sequenceShow/hide protein sequence
MQKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGGNDDHPADHIIEIVFTSIVWRYSFYNHLPFGVVSFNVLIHR