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Carg15280 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15280
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-binding protein S1FA-like
Genome locationCarg_Chr03:9081990..9085181
RNA-Seq ExpressionCarg15280
SyntenyCarg15280
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006779 - DNA binding protein S1FA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604436.1 DNA-binding protein S1FA2, partial [Cucurbita argyrosperma subsp. sororia]4.6e-2198.21Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
KAG7034580.1 hypothetical protein SDJN02_04310 [Cucurbita argyrosperma subsp. argyrosperma]1.6e-90100Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSHHKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATA
        MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSHHKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATA
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSHHKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATA

Query:  KEHGKQEEDDLRLHAPWTVLQILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD
        KEHGKQEEDDLRLHAPWTVLQILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD
Subjt:  KEHGKQEEDDLRLHAPWTVLQILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD
XP_022926041.1 DNA-binding protein S1FA-like [Cucurbita moschata]4.6e-2198.21Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
XP_022979165.1 DNA-binding protein S1FA-like [Cucurbita maxima]9.7e-1991.07Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA Y+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
XP_038881351.1 DNA-binding protein S1FA-like [Benincasa hispida]1.8e-1787.5Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        ME+DF+FGDKVPPAVNRMGNVI DAD RGFNPGLIVLLVVGGLLLAFL  NYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
TrEMBL top hitse value%identityAlignment
A0A0A0KEM3 DNA-binding protein S1FA7.5e-1783.93Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        ME+DF+FGDKVPPAVNRMGNVI D + RGFNPGLIVLLVVGGLL AFLV NYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
A0A6J1EDS2 DNA-binding protein S1FA-like2.3e-2198.21Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
A0A6J1HDT2 DNA-binding protein S1FA-like1.5e-1785.71Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        ME+DF+FGDKVPPAVNRMGNVI +AD RGFNPGLIVLLVVGGLLLAFL  NYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
A0A6J1I6D0 DNA-binding protein S1FA-like1.2e-1785.71Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        ME+DF+FGDKVPPAVNRMGNVI D+D RGFNPGLIVLLVVGGLLLAFL  NYALY+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
A0A6J1ISG2 DNA-binding protein S1FA-like4.7e-1991.07Show/hide
Query:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        MEEDFE G+KVPPAVNRMGNVIGDADGRGFNPGLIV LVVGGLLLAFLVVNYA Y+
Subjt:  MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
SwissProt top hitse value%identityAlignment
P42551 DNA-binding protein S1FA11.4e-0468.75Show/hide
Query:  ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        A+ +G NPGLIVLLVVGG LL FL+ NY LY+
Subjt:  ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
P42552 DNA-binding protein S1FA3.1e-0461.76Show/hide
Query:  IGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY
        + + + +G NPGLIVLLV+GGLLL FLV N+ LY
Subjt:  IGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY
Q42337 DNA-binding protein S1FA25.4e-0461.29Show/hide
Query:  DGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        + +G NPGLIVLLV+GGLL+ FL+ NY +Y+
Subjt:  DGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
Q93VI0 DNA-binding protein S1FA34.1e-0466.67Show/hide
Query:  GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY
        G  + +G NPGLIVLLV+GGLLL FLV N+ LY
Subjt:  GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY
Arabidopsis top hitse value%identityAlignment
AT2G37120.1 S1FA-like DNA-binding protein3.8e-0561.29Show/hide
Query:  DGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        + +G NPGLIVLLV+GGLL+ FL+ NY +Y+
Subjt:  DGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
AT3G09735.1 S1FA-like DNA-binding protein2.9e-0566.67Show/hide
Query:  GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY
        G  + +G NPGLIVLLV+GGLLL FLV N+ LY
Subjt:  GDADGRGFNPGLIVLLVVGGLLLAFLVVNYALY
AT3G53370.1 S1FA-like DNA-binding protein1.0e-0568.75Show/hide
Query:  ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI
        A+ +G NPGLIVLLVVGG LL FL+ NY LY+
Subjt:  ADGRGFNPGLIVLLVVGGLLLAFLVVNYALYI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAAGATTTCGAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCT
GCTCGTAGTCGGCGGGCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGAAAAGG
GAGAGACTAAAGCAAGGTATCTCTGCACCTGGCGAAATCTGAACATTATAACCGGAAGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGAT
CTCAGACTCCACGCCCCATGGACTGTTCTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGG
CCCCATCGAGACCCCAAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAG
mRNA sequenceShow/hide mRNA sequence
TATTTTTCTGGAAGCTTTGGCGGTTCATGTCGTTGGTACATCACAAAAACAGGAACTCGTTGCGAAGGCCATCTCTCCGCTTCTGAATTTCAACCATGGAAGAAGATTTC
GAGTTCGGTGACAAAGTCCCGCCGGCCGTCAACCGCATGGGGAACGTGATTGGAGATGCGGATGGAAGAGGATTCAATCCAGGACTGATTGTGCTGCTCGTAGTCGGCGG
GCTGCTCTTGGCTTTTCTTGTTGTGAATTATGCTCTCTACATAAGACCCTCCCACCACAAAAGAAGAACCAGTTTCCAAGAAGAAGATGAAAAGGGAGAGACTAAAGCAA
GGTATCTCTGCACCTGGCGAAATCTGAACATTATAACCGGAAGTCAGCAGCAAGACGCCACTGCAAAAGAACATGGAAAGCAGGAGGAAGATGATCTCAGACTCCACGCC
CCATGGACTGTTCTGCAGATATTGAGAATCAAGAATGGTAAAGGAGAAGGTTCAACTTGCCTCCAGATTGAACATTCGGCGGATAGCTGTGCGGGCCCCATCGAGACCCC
AAGGATCAGAATGGGTATTTATTGGAAGATTAAGGATTAGGGAACTTGTTTATTCAAACCAATTAAAAGTGATAAGAATGGTATTAGAGATCCAAGAATTCTGCATAGCC
CAGATCTTATCTGAAACTCTATTTGAAGAAACAACAGAATACTCCTGCCTAAAGAAGTGCTAGCATATTAAGATCATGGTGGATAAGGCACCCTATCTAAAGTAAGAAGA
AGAATATTTTGGTAGGAATAAGCTACAAACCCAAAAATCAGGGAAAACGAATCACGTATCCCCAAAGCCTAACCTTTCAGCAAAAACTCAATTCAAATGAAGAAAACGAA
TCGACTTACAAACTTCTAGATCGCTACTGCAGAACTCATC
Protein sequenceShow/hide protein sequence
MEEDFEFGDKVPPAVNRMGNVIGDADGRGFNPGLIVLLVVGGLLLAFLVVNYALYIRPSHHKRRTSFQEEDEKGETKARYLCTWRNLNIITGSQQQDATAKEHGKQEEDD
LRLHAPWTVLQILRIKNGKGEGSTCLQIEHSADSCAGPIETPRIRMGIYWKIKD