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Carg15337 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15337
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L34, chloroplastic
Genome locationCarg_Chr03:9351115..9353571
RNA-Seq ExpressionCarg15337
SyntenyCarg15337
Gene Ontology termsGO:0005525 - GTP binding (molecular function)
InterPro domainsIPR011719 - Conserved hypothetical protein CHP02058
IPR037103 - Tubulin/FtsZ-like, C-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034637.1 hypothetical protein SDJN02_04367, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-90100Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
        MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR

Query:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLGIMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        DAISSNSIPAFRRGSIPGVTFGEMKLQIKLGIMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLGIMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022925764.1 uncharacterized protein LOC111433074 [Cucurbita moschata]1.1e-8688.6Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
        MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR

Query:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG                      IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_022977255.1 uncharacterized protein LOC111477623 [Cucurbita maxima]1.8e-7973.57Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
        MTGS VLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRP ISRLVKVTAASSMEVEQGGKSAPVGST PMKLLFVEMGVGYDQHGQDITAAAMRACR
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR

Query:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG--------------------------------------------------------IMNVEVVDGGLIC
        DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG                                                        IMNV+VVDGGLIC
Subjt:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG--------------------------------------------------------IMNVEVVDGGLIC

Query:  SSGVHVEEMGDKNDDCYIVNAAVYVGY
        SSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  SSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_023544561.1 uncharacterized protein LOC111804102 [Cucurbita pepo subsp. pepo]1.5e-8386.53Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
        MTGS VLNLQFPRVTDLRFRSYPLSN+HSSSSAHLICSPTRP ISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR

Query:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        DAISSNSIPAFRRGSIPGVTF EMKLQIKLG                      IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

XP_038883708.1 uncharacterized protein LOC120074614 isoform X1 [Benincasa hispida]1.2e-7280.41Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MTGS VLN QF  VTD RFRSY LSN + S SAHLICS TRP ISRLVKVTA SSMEVEQGGKSAP GST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG                      I+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

TrEMBL top hitse value%identityAlignment
A0A0A0KNJ4 Uncharacterized protein8.5e-7277.84Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MT S +LNLQF  +TD RFRSY LSN H SSS HLICS TRP ISRL+KVTA SSMEVEQGG+SAPV ST PPMKLLFVEMGVGYDQHGQD+TAAAMRAC
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLG                      I+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A1S3B079 uncharacterized protein LOC103484457 isoform X13.8e-7278.35Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRAC
        MTGS +LNLQF  +TD RFRSYP SN H SS  HLICS TRP ISRL+KVTA SSMEVEQGG+SAPV ST PPMKLLFVEMGVGYDQHGQDITAAAMRAC
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRAC

Query:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        RDAISSNSIPAFRRGSIPGV+FGEMKLQIKLG                      I+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  RDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1CMQ6 uncharacterized protein LOC111012382 isoform X11.8e-6974.87Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQH-SSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRA
        MTGS V+N+ FP   +LRFRSY  SN++ SSSSAH +CS TRPPISRL+K TAASSMEVE+GG+SA VGST  PMKLLFVEMGVGYDQHGQD+TAAAMRA
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQH-SSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGST-PPMKLLFVEMGVGYDQHGQDITAAAMRA

Query:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        CRDAISSNSIPAFRRGSIPGVTF +MKLQIKLG                      I+NVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  CRDAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ED44 uncharacterized protein LOC1114330745.5e-8788.6Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
        MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR

Query:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG                      IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

A0A6J1ILT2 uncharacterized protein LOC1114776238.5e-8073.57Show/hide
Query:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR
        MTGS VLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRP ISRLVKVTAASSMEVEQGGKSAPVGST PMKLLFVEMGVGYDQHGQDITAAAMRACR
Subjt:  MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACR

Query:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG--------------------------------------------------------IMNVEVVDGGLIC
        DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG                                                        IMNV+VVDGGLIC
Subjt:  DAISSNSIPAFRRGSIPGVTFGEMKLQIKLG--------------------------------------------------------IMNVEVVDGGLIC

Query:  SSGVHVEEMGDKNDDCYIVNAAVYVGY
        SSGVHVEEMGDKNDDCYIVNAAVYVGY
Subjt:  SSGVHVEEMGDKNDDCYIVNAAVYVGY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29040.1 unknown protein2.1e-4657.84Show/hide
Query:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI
        +LR R  P     SSS    + S ++       P ISR +KV A S+ME      +  V +   MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSI
Subjt:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI

Query:  PAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        PAFRRGSIPGV+FGEMKLQIKLG                      I+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  PAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.2 unknown protein9.7e-3650.81Show/hide
Query:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI
        +LR R  P     SSS    + S ++       P ISR +KV A S+ME      +  V +   MKLLFVEMGVGYDQHGQD+T+AAM+AC         
Subjt:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI

Query:  PAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
              SIPGV+FGEMKLQIKLG                      I+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  PAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY

AT1G29040.3 unknown protein1.7e-1952.34Show/hide
Query:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI
        +LR R  P     SSS    + S ++       P ISR +KV A S+ME      +  V +   MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSI
Subjt:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI

Query:  PAFRRGS
        PAFRRG+
Subjt:  PAFRRGS

AT1G29040.4 unknown protein2.1e-4657.84Show/hide
Query:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI
        +LR R  P     SSS    + S ++       P ISR +KV A S+ME      +  V +   MKLLFVEMGVGYDQHGQD+T+AAM+AC++AISSNSI
Subjt:  DLRFRSYPLSNQHSSSSAHLICSPTR-------PPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSI

Query:  PAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY
        PAFRRGSIPGV+FGEMKLQIKLG                      I+NVEVVDGGLICSSGV VEEMGD N+DCYIVN AVYVGY
Subjt:  PAFRRGSIPGVTFGEMKLQIKLG----------------------IMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGGCTCCAGAGTCCTAAATCTACAATTCCCGCGGGTAACTGATCTTAGGTTTCGTTCTTACCCTCTTTCTAATCAACATTCTTCATCATCTGCGCATTTGATTTG
CTCTCCTACACGCCCTCCAATTTCTCGCCTTGTCAAGGTTACTGCTGCGTCGTCAATGGAGGTCGAGCAGGGTGGAAAATCTGCGCCTGTTGGCAGCACACCTCCGATGA
AGCTCTTATTCGTCGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAATGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCAGCA
TTCCGTAGAGGTTCAATTCCTGGAGTCACATTTGGAGAGATGAAACTACAGATCAAGCTTGGAATTATGAATGTTGAGGTCGTCGATGGTGGCTTAATATGCTCCAGCGG
TGTGCATGTGGAAGAAATGGGAGACAAAAATGATGACTGTTACATAGTAAATGCTGCTGTTTATGTTGGCTAC
mRNA sequenceShow/hide mRNA sequence
CATGGATTGGATTCGCAGTTTCTTCTAGCCATTTAGCAACACAGATGACAGGCTCCAGAGTCCTAAATCTACAATTCCCGCGGGTAACTGATCTTAGGTTTCGTTCTTAC
CCTCTTTCTAATCAACATTCTTCATCATCTGCGCATTTGATTTGCTCTCCTACACGCCCTCCAATTTCTCGCCTTGTCAAGGTTACTGCTGCGTCGTCAATGGAGGTCGA
GCAGGGTGGAAAATCTGCGCCTGTTGGCAGCACACCTCCGATGAAGCTCTTATTCGTCGAGATGGGTGTTGGCTACGATCAACATGGCCAAGATATCACGGCGGCTGCAA
TGCGAGCCTGCAGGGATGCCATATCTTCCAATTCGATTCCAGCATTCCGTAGAGGTTCAATTCCTGGAGTCACATTTGGAGAGATGAAACTACAGATCAAGCTTGGAATT
ATGAATGTTGAGGTCGTCGATGGTGGCTTAATATGCTCCAGCGGTGTGCATGTGGAAGAAATGGGAGACAAAAATGATGACTGTTACATAGTAAATGCTGCTGTTTATGT
TGGCTAC
Protein sequenceShow/hide protein sequence
MTGSRVLNLQFPRVTDLRFRSYPLSNQHSSSSAHLICSPTRPPISRLVKVTAASSMEVEQGGKSAPVGSTPPMKLLFVEMGVGYDQHGQDITAAAMRACRDAISSNSIPA
FRRGSIPGVTFGEMKLQIKLGIMNVEVVDGGLICSSGVHVEEMGDKNDDCYIVNAAVYVGY