CuGenDBv2

Gene ID	Carg15339
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	50S ribosomal protein L34, chloroplastic
Genome location	Carg_Chr03:9357548..9358464
RNA-Seq Expression	Carg15339
Synteny	Carg15339
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005762 - mitochondrial large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR000271 - Ribosomal protein L34

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7034639.1 50S ribosomal protein L34, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-60

100

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Query:  MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTN
        MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTN
Subjt:  MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTN

Query:  GRAVLKCRRAKDRKVLCTKSNPSSGKGA
        GRAVLKCRRAKDRKVLCTKSNPSSGKGA
Subjt:  GRAVLKCRRAKDRKVLCTKSNPSSGKGA

XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]

2.7e-40

75.91

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLVFS  S G CSVSLNT N  +ARSGLLH SFL SSSLSCSSSF+      DW       QGK R LVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]

3.2e-41

77.37

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLV S  S G CSVSLNTAN T+ARSGLLH SFL SSSLSCSSSF+      DW       QGK RSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

XP_022142342.1 50S ribosomal protein L34, chloroplastic [Momordica charantia]

3.5e-40

75.18

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFAD-----------WGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLV S  S  CCSVSLNTAN T+ARSGLL  SFL SSSLSCSSSF+            W  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFAD-----------WGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTT+GRAVLK RRAK RKVLCTKS PSSGKGA
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]

6.4e-42

77.37

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLV S    GCCSVSLNTAN T+ARSGLLH SFL+SSSLSCSSSF+      DW       QGK RSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KI92 Uncharacterized protein

1.3e-40

75.91

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLVFS  S G CSVSLNT N  +ARSGLLH SFL SSSLSCSSSF+      DW       QGK R LVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic

1.5e-41

77.37

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLV S  S G CSVSLNTAN T+ARSGLLH SFL SSSLSCSSSF+      DW       QGK RSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

A0A5D3CSJ7 50S ribosomal protein L34

1.5e-41

77.37

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLV S  S G CSVSLNTAN T+ARSGLLH SFL SSSLSCSSSF+      DW       QGK RSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWGR-----QGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

A0A6J1CMH5 50S ribosomal protein L34, chloroplastic

1.7e-40

75.18

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFAD-----------WGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLV S  S  CCSVSLNTAN T+ARSGLL  SFL SSSLSCSSSF+            W  QGK RSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFAD-----------WGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTT+GRAVLK RRAK RKVLCTKS PSSGKGA
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

A0A6J1KNU0 50S ribosomal protein L34, chloroplastic-like

2.1e-38

75.18

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWG-----RQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG
        +RVPSASLVFS  S    S+SLNTAN  +AR GLLH SFL SSSLSCSSSF+      DW       QGKRRSLVVRAGKAA+CQTK+NRSRKSLA THG
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFA------DWG-----RQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHG

Query:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        FRRRMRTTNGRAVLK RRAK RKVLCTKSNPSSGK A
Subjt:  FRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

SwissProt top hits

e value

%identity

Alignment

P82244 50S ribosomal protein L34, chloroplastic

5.8e-22

57.35

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Query:  RVPSASLVFSAAS-TGCCSVSLNTANYTAARSGLLHSSFLT-SSSLSCSSSFADWG---------RQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGF
        R PSASL F   S T    VS N     +ARSG LH SFL  SSSLS + S    G            + R  VVRAGKAA+C TK++RSRKSLA THGF
Subjt:  RVPSASLVFSAAS-TGCCSVSLNTANYTAARSGLLHSSFLT-SSSLSCSSSFADWG---------RQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGF

Query:  RRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        R RM TT+GRA+LK RRAK RK+LCTK+NPSSGK A
Subjt:  RRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

Q9LP37 50S ribosomal protein L34, chloroplastic

5.8e-22

57.25

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Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADW-----------GRQG-KRRSLVVRAGKAAICQTKQNRSRKSLAWTH
        I VPSASL   +  TGC   S +    ++A S LLH SFL SS +S +S F+             G  G +RR LVVRAGKAA+CQTK++RSRKSLA TH
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADW-----------GRQG-KRRSLVVRAGKAAICQTKQNRSRKSLAWTH

Query:  GFRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        GFRRRMRTT+GRA +K RRAK R  LC KSNPSSGK A
Subjt:  GFRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

Arabidopsis top hits

e value

%identity

Alignment

AT1G29070.1 Ribosomal protein L34

4.1e-23

57.25

Show/hide

Query:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADW-----------GRQG-KRRSLVVRAGKAAICQTKQNRSRKSLAWTH
        I VPSASL   +  TGC   S +    ++A S LLH SFL SS +S +S F+             G  G +RR LVVRAGKAA+CQTK++RSRKSLA TH
Subjt:  IRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADW-----------GRQG-KRRSLVVRAGKAAICQTKQNRSRKSLAWTH

Query:  GFRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA
        GFRRRMRTT+GRA +K RRAK R  LC KSNPSSGK A
Subjt:  GFRRRMRTTNGRAVLKCRRAKDRKVLCTKSNPSSGKGA

Sequences

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CDS sequence

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ATGCCCATACGCGTTCCCTCAGCTTCTCTTGTATTCTCCGCCGCTTCTACGGGTTGCTGCTCCGTATCTCTTAATACCGCCAACTACACTGCCGCCCGTTCTGGACTGCT
CCATTCTTCATTTCTTACATCTTCCTCCCTTTCGTGCTCTTCATCTTTTGCAGATTGGGGTCGGCAAGGGAAGCGTCGGAGCTTAGTGGTGAGGGCTGGCAAGGCTGCAA
TATGTCAGACGAAACAAAACAGATCACGTAAATCCTTAGCTTGGACTCATGGTTTTCGCAGACGAATGCGAACCACCAATGGTAGAGCTGTCCTAAAGTGCAGACGTGCC
AAGGATAGGAAGGTCCTCTGCACGAAATCCAACCCAAGCAGTGGAAAGGGTGCTTAA

mRNA sequence

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Protein sequence

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MPIRVPSASLVFSAASTGCCSVSLNTANYTAARSGLLHSSFLTSSSLSCSSSFADWGRQGKRRSLVVRAGKAAICQTKQNRSRKSLAWTHGFRRRMRTTNGRAVLKCRRA
KDRKVLCTKSNPSSGKGA

Carg15339 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome