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Carg15344 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15344
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Genome locationCarg_Chr03:9370504..9372608
RNA-Seq ExpressionCarg15344
SyntenyCarg15344
Gene Ontology termsGO:0009299 - mRNA transcription (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR006936 - ALOG domain
IPR040222 - ALOG family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052619.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa]2.3e-2984Show/hide
Query:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        A VPLSR+ESQKRRDWNTFG YLKN+T PVSLS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

KAG7034644.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-127100Show/hide
Query:  MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTAAA
        MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTAAA
Subjt:  MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTAAA

Query:  FLRLILDFSGLQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLR
        FLRLILDFSGLQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLR
Subjt:  FLRLILDFSGLQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLR

Query:  YLDQFGKTRVHSHGCVFFGQLDPPALCPLPSALSP
        YLDQFGKTRVHSHGCVFFGQLDPPALCPLPSALSP
Subjt:  YLDQFGKTRVHSHGCVFFGQLDPPALCPLPSALSP

KGN49306.1 hypothetical protein Csa_004072 [Cucumis sativus]2.3e-2984Show/hide
Query:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        A VPLSR+ESQKRRDWNTFG YLKN+T PVSLS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

XP_008465528.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]2.3e-2984Show/hide
Query:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        A VPLSR+ESQKRRDWNTFG YLKN+T PVSLS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

XP_023518847.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]7.9e-3082.05Show/hide
Query:  TAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        T A+AVPLSR+ESQKRRDWNTFG YLKN+T PV LS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  TAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

TrEMBL top hitse value%identityAlignment
A0A0A0KHV6 Uncharacterized protein3.0e-3574.56Show/hide
Query:  MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTA--
        MNNPRS IV LPII+RQL GK PAI RRLGS ++SSDG + ERPT  PVPLTTL EMS LINIVIV+VTEFGVH LTSWT NNLFRPLHLC ITFTTA  
Subjt:  MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTA--

Query:  -AAFLRLILDFSGL
         ++FL  +L FSGL
Subjt:  -AAFLRLILDFSGL

A0A0A0KNK5 ALOG domain-containing protein1.1e-2984Show/hide
Query:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        A VPLSR+ESQKRRDWNTFG YLKN+T PVSLS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

A0A1S3CP28 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like1.1e-2984Show/hide
Query:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        A VPLSR+ESQKRRDWNTFG YLKN+T PVSLS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

A0A5A7UGI5 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like1.1e-2984Show/hide
Query:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        A VPLSR+ESQKRRDWNTFG YLKN+T PVSLS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  AAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

A0A6J1EEZ4 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like1.4e-2980.77Show/hide
Query:  TAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        T  +AVPLSR+ESQKRRDWNTFG YLKN+T PV LS+C+ NHVL+FLRYLDQFGKTRVHSHGCVFFGQ DPPA CP P
Subjt:  TAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

SwissProt top hitse value%identityAlignment
B8AIK3 Protein G1-like18.7e-2470Show/hide
Query:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        SR+ESQKRRDW TFG YL+N   P+ LS CS  HVL+FLRYLDQFGKT+VH+HGC FFG   PPA CP P
Subjt:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

Q0E3M2 Protein G1-like18.7e-2470Show/hide
Query:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        SR+ESQKRRDW TFG YL+N   P+ LS CS  HVL+FLRYLDQFGKT+VH+HGC FFG   PPA CP P
Subjt:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

Q7XDD0 Protein G1-like53.3e-2364.2Show/hide
Query:  SATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        ++ +AA A P SR+ESQKRRDWNTFG YL+N   P+SL+ CS  HVL+FLRYLDQFGKT+VH+  C FFG   PPA CP P
Subjt:  SATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

Q9S7R3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 104.6e-2572.86Show/hide
Query:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        SR+ESQKRRDWNTFG YLKN+  PV +S+CS NHVLDFLRYLDQFGKT+VH  GC+F+GQ +PPA C  P
Subjt:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

Q9ZVA0 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 76.7e-2467.61Show/hide
Query:  LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        LSR+ESQKRRDWNTF  YL+N+  PV +S C  NH+LDFL+YLDQFGKT+VH HGCVFFGQ++P   C  P
Subjt:  LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

Arabidopsis top hitse value%identityAlignment
AT1G78815.1 Protein of unknown function (DUF640)4.8e-2567.61Show/hide
Query:  LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        LSR+ESQKRRDWNTF  YL+N+  PV +S C  NH+LDFL+YLDQFGKT+VH HGCVFFGQ++P   C  P
Subjt:  LSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

AT2G31160.1 Protein of unknown function (DUF640)2.0e-2358.75Show/hide
Query:  ATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        +++++ +   SR+E+QKRRDWNTFG YL+N   P+SLS CS  HVL+FLRYLDQFGKT+VH++ C F+G  +PPA CP P
Subjt:  ATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

AT2G42610.1 Protein of unknown function (DUF640)3.3e-2672.86Show/hide
Query:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        SR+ESQKRRDWNTFG YLKN+  PV +S+CS NHVLDFLRYLDQFGKT+VH  GC+F+GQ +PPA C  P
Subjt:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

AT2G42610.2 Protein of unknown function (DUF640)3.3e-2672.86Show/hide
Query:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        SR+ESQKRRDWNTFG YLKN+  PV +S+CS NHVLDFLRYLDQFGKT+VH  GC+F+GQ +PPA C  P
Subjt:  SRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP

AT3G23290.2 Protein of unknown function (DUF640)4.0e-2461.73Show/hide
Query:  SATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP
        S++  +    LSR+E+QKRRDWNTFG YL+N   P+SLS CS  HVL+FLRYLDQFGKT+VH+H C FFG  +PPA C  P
Subjt:  SATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQLDPPALCPLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATCCCAGAAGCAGCATCGTAAAGTTGCCCATAATCATCAGGCAGCTCACCGGAAAGCGTCCGGCAATTGGGCGGCGGCTTGGCTCTCCGTCGTCCAGCTCCGA
TGGGGACATTCCGGAGCGCCCCACCAGCAGTCCAGTACCTTTGACAACCCTTACAGAAATGTCTGGGCTGATTAACATTGTAATTGTTAAAGTAACAGAATTTGGTGTCC
ATGCTCTTACATCTTGGACAAGGAATAATCTTTTCAGGCCTCTTCATCTCTGTTTGATCACCTTCACCACCGCCGCCGCCTTTCTCCGGTTGATCCTTGACTTTTCTGGT
CTGCAAAGGAATGATAGTGCCAAAAAGCTTAATTCCAGCCGTGGCGCTACCATGAAACTGAGCCATATGCGACAGGCCAAGCTGGGACGGCTCGTCATCTCGGTCGCCCA
CCGCCGATCAGCAACAACAGCTGCAGCCGCCGTTCCTTTGAGCCGCCACGAGTCCCAAAAGCGGCGAGATTGGAACACTTTCGGGCCATATCTTAAAAACCGAACACGCC
CAGTGTCGTTATCCTACTGTAGCCGTAACCATGTACTTGATTTTCTTCGATACCTGGACCAGTTCGGAAAAACAAGGGTTCACTCACATGGGTGTGTCTTTTTTGGACAA
CTCGACCCACCTGCCCTCTGCCCTCTGCCCTCTGCCCTTTCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATAATCCCAGAAGCAGCATCGTAAAGTTGCCCATAATCATCAGGCAGCTCACCGGAAAGCGTCCGGCAATTGGGCGGCGGCTTGGCTCTCCGTCGTCCAGCTCCGA
TGGGGACATTCCGGAGCGCCCCACCAGCAGTCCAGTACCTTTGACAACCCTTACAGAAATGTCTGGGCTGATTAACATTGTAATTGTTAAAGTAACAGAATTTGGTGTCC
ATGCTCTTACATCTTGGACAAGGAATAATCTTTTCAGGCCTCTTCATCTCTGTTTGATCACCTTCACCACCGCCGCCGCCTTTCTCCGGTTGATCCTTGACTTTTCTGGT
CTGCAAAGGAATGATAGTGCCAAAAAGCTTAATTCCAGCCGTGGCGCTACCATGAAACTGAGCCATATGCGACAGGCCAAGCTGGGACGGCTCGTCATCTCGGTCGCCCA
CCGCCGATCAGCAACAACAGCTGCAGCCGCCGTTCCTTTGAGCCGCCACGAGTCCCAAAAGCGGCGAGATTGGAACACTTTCGGGCCATATCTTAAAAACCGAACACGCC
CAGTGTCGTTATCCTACTGTAGCCGTAACCATGTACTTGATTTTCTTCGATACCTGGACCAGTTCGGAAAAACAAGGGTTCACTCACATGGGTGTGTCTTTTTTGGACAA
CTCGACCCACCTGCCCTCTGCCCTCTGCCCTCTGCCCTTTCCCCTTGA
Protein sequenceShow/hide protein sequence
MNNPRSSIVKLPIIIRQLTGKRPAIGRRLGSPSSSSDGDIPERPTSSPVPLTTLTEMSGLINIVIVKVTEFGVHALTSWTRNNLFRPLHLCLITFTTAAAFLRLILDFSG
LQRNDSAKKLNSSRGATMKLSHMRQAKLGRLVISVAHRRSATTAAAAVPLSRHESQKRRDWNTFGPYLKNRTRPVSLSYCSRNHVLDFLRYLDQFGKTRVHSHGCVFFGQ
LDPPALCPLPSALSP