CuGenDBv2

Gene ID	Carg15370
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cyclic phosphodiesterase-like
Genome location	Carg_Chr03:9470291..9471685
RNA-Seq Expression	Carg15370
Synteny	Carg15370
Gene Ontology terms	GO:0009187 - cyclic nucleotide metabolic process (biological process) GO:0004113 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase activity (molecular function)
InterPro domains	IPR009097 - Cyclic phosphodiesterase IPR012386 - 2',3'-cyclic-nucleotide 3'-phosphodiesterase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6581386.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-105

98.96

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VVETSSHCCGHFG NNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

KAG7034670.1 Cyclic phosphodiesterase, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.8e-107

100

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

XP_022978766.1 cyclic phosphodiesterase-like [Cucurbita maxima]

2.0e-103

97.4

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES  IQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFG  NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFP+TRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

XP_023522563.1 cyclic phosphodiesterase-like [Cucurbita pepo subsp. pepo]

3.9e-104

97.92

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPT +VVETSSHCCGHFG  NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

XP_023543945.1 cyclic phosphodiesterase-like isoform X2 [Cucurbita pepo subsp. pepo]

3.6e-105

98.96

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFG  NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AYZ1 cyclic phosphodiesterase-like

6.2e-87

82.81

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        M NPES  IQ SE E NVYSVWALPPEDV+ARI  LMNSLRSEFGGPQFEPHITVVGAIRLT +DALNKF +AC+G+KAYQATVD VSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VVETSSH C HFG  NSTPYMPH+SLLYA+ISDE+KKQAKE+A+KLDEA+NGL FPITRLAL+KTDT DETLKSWEKI E DL SS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1EEQ8 cyclic phosphodiesterase-like

1.1e-86

82.29

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGAIRLT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VV+ SSHCCGHFG NNSTPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKSWEKIAE DLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1EGC1 cyclic phosphodiesterase-like

6.1e-103

97.92

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPESTPIQPSEGEKNVYSVWALPPEDV ARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFG  N TPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1INY2 cyclic phosphodiesterase-like

9.5e-104

97.4

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANPES  IQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTTQVVETSSHCCGHFG  NSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFP+TRLALYKTDTGDETLKSWEKIAEQDLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

A0A6J1KNB2 cyclic phosphodiesterase-like

7.3e-88

82.81

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Query:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL
        MANP S PI+P EGE  +YSVWALPPEDV  +I +LM+SLRSEFGGP+FEPHITVVGAIRLT  DALNKFRSACEG+KAYQATVD VS GT FYQCVFLL
Subjt:  MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLL

Query:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS
        IHPTT+VV+ SSHCCGHFGCNNSTPYMPHLSLLYANISDE KK+AKE+A+KL+EA+NGL  P+TRLALYKTDTGDETLKSWEKIAE DLPSS
Subjt:  IHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

SwissProt top hits

e value

%identity

Alignment

O04147 Cyclic phosphodiesterase

2.4e-56

58.96

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Query:  EGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS
        E +K+VYSVWALP E+   R + LM +LRSEF GP+F PH+TV  +  LT D+A   F SAC+GLKAY ATVD VSTGTFF+QCVFLL+  T +V+E   
Subjt:  EGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS

Query:  HCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA
        HC  HF C+ +TPYMPHLSLLYA +++E+KK A+E A  LD +++GLSF + RLAL KTDT D+TL++WE +A
Subjt:  HCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G18930.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

1.7e-57

58.96

Show/hide

Query:  EGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS
        E +K+VYSVWALP E+   R + LM +LRSEF GP+F PH+TV  +  LT D+A   F SAC+GLKAY ATVD VSTGTFF+QCVFLL+  T +V+E   
Subjt:  EGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVETSS

Query:  HCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA
        HC  HF C+ +TPYMPHLSLLYA +++E+KK A+E A  LD +++GLSF + RLAL KTDT D+TL++WE +A
Subjt:  HCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIA

AT4G18940.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein

7.0e-43

42.71

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Query:  MANPESTPIQP------SEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAI--RLTLDDALNKFRSACEGLKAYQATVDCVSTGTF
        M    +TP+QP       E EK +Y++WA+P +DV  R++ LM  LRSEFGGP F+PH+T+VG    +LT  +A   F+SACEG K Y ATVD VS GT 
Subjt:  MANPESTPIQP------SEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAI--RLTLDDALNKFRSACEGLKAYQATVDCVSTGTF

Query:  FYQCVFLLIHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPS
        ++QC+++ +  T +V+  + H   HF       Y+PH+S+LY ++++ +KK+A E A  LD +++GL+F I R+AL+ TD     + SW K+ E  L S
Subjt:  FYQCVFLLIHPTTQVVETSSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPS

Sequences

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CDS sequence

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ATGGCGAACCCAGAATCCACCCCTATCCAACCCTCTGAAGGGGAGAAGAACGTGTATTCGGTCTGGGCTCTTCCTCCAGAAGATGTTACGGCCAGAATCAGGACTCTCAT
GAACAGCCTCAGATCCGAGTTCGGCGGGCCCCAATTCGAGCCACATATCACTGTCGTTGGGGCTATTCGTCTCACCCTTGACGATGCCCTCAACAAATTTCGCTCGGCTT
GCGAGGGGCTTAAGGCTTATCAAGCCACCGTCGATTGTGTATCTACCGGAACCTTCTTCTACCAGTGTGTTTTTCTCCTTATTCATCCTACCACTCAGGTGGTGGAGACT
AGTTCACATTGCTGTGGACATTTTGGTTGCAACAACTCTACCCCTTACATGCCGCATTTGAGCCTTCTGTATGCCAACATATCAGATGAACAAAAGAAGCAGGCAAAAGA
ACTAGCAGAGAAGCTGGACGAAGCCATTAATGGCCTGAGCTTCCCCATCACTCGTCTTGCACTATACAAAACAGACACTGGAGATGAAACTCTGAAGTCCTGGGAGAAAA
TTGCAGAACAGGATCTTCCTTCAAGTTAA

mRNA sequence

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Protein sequence

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MANPESTPIQPSEGEKNVYSVWALPPEDVTARIRTLMNSLRSEFGGPQFEPHITVVGAIRLTLDDALNKFRSACEGLKAYQATVDCVSTGTFFYQCVFLLIHPTTQVVET
SSHCCGHFGCNNSTPYMPHLSLLYANISDEQKKQAKELAEKLDEAINGLSFPITRLALYKTDTGDETLKSWEKIAEQDLPSS

Carg15370 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome