; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg15394 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15394
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-binding protein DDB_G0278111-like
Genome locationCarg_Chr03:9563123..9567141
RNA-Seq ExpressionCarg15394
SyntenyCarg15394
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR002836 - PDCD5-like
IPR036883 - PDCD5-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022925641.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita moschata]3.3e-54100Show/hide
Query:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLDDDD
        LEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLDDDD

XP_022925642.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata]8.6e-55100Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        LLEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

XP_023543162.1 DNA-binding protein DDB_G0278111-like isoform X1 [Cucurbita pepo subsp. pepo]2.1e-5399.21Show/hide
Query:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLDDDD
        LEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLDDDD

XP_023543163.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo]5.5e-5499.22Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMAQRG GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        LLEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

XP_038881892.1 DNA-binding protein DDB_G0278111 [Benincasa hispida]1.2e-5397.66Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMAQRG+GSQNNPEQQKAQEEA+SEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

TrEMBL top hitse value%identityAlignment
A0A6J1EC84 DNA-binding protein DDB_G0278111-like isoform X24.1e-55100Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        LLEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

A0A6J1ECS1 DNA-binding protein DDB_G0278111-like isoform X11.6e-54100Show/hide
Query:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLDDDD
        LEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLDDDD

A0A6J1IUM6 DNA-binding protein DDB_G0278111-like isoform X11.6e-54100Show/hide
Query:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
        DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL
Subjt:  DDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITL

Query:  LEQINNQTTKQTKVTIQRRRSVLDDDD
        LEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LEQINNQTTKQTKVTIQRRRSVLDDDD

A0A6J1IVC3 DNA-binding protein DDB_G0278111-like isoform X24.1e-55100Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        LLEQINNQTTKQTKVTIQRRRSVLDDDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

A0A6J1KTQ8 DNA-binding protein DDB_G0278111-like2.3e-5396.88Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LIT
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        LLEQINNQTTKQTKVTIQRRRSVL+DDD
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

SwissProt top hitse value%identityAlignment
O13929 Uncharacterized protein C23C4.09c1.8e-1542.86Show/hide
Query:  DPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL
        D EL+AIRQ R+ +L A+ G    N      + ++ +   +E RQ +LSQIL   AR+RL RIALV+ ++A  VE+++LR A+ GQI  K+SE  LI LL
Subjt:  DPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLL

Query:  EQINNQTTKQTKVTIQRRRSVLDDDD
        E+I+ + +K+ +  I   R V DD+D
Subjt:  EQINNQTTKQTKVTIQRRRSVLDDDD

O14737 Programmed cell death protein 51.1e-1542.97Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        +L++++ QT K T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

P56812 Programmed cell death protein 51.1e-1542.97Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        +LE+++ QT K+T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

Q54YS0 DNA-binding protein DDB_G02781111.5e-1750.88Show/hide
Query:  QELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTK
        Q+L   +G G   +PE Q+ QE  + EA ERRQ +L QIL+  ARERL+RI +VKPEK+R +ED+I+RAAQ GQ+ E+V + +LI+LLEQ+ ++ TK+T 
Subjt:  QELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTK

Query:  VTIQRRRSVLDDDD
        +T++RR   ++DDD
Subjt:  VTIQRRRSVLDDDD

Q5RBT0 Programmed cell death protein 51.1e-1542.97Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT
        M D ELEA+R++R+ EL A+ G           AQ+EAK    E R  +L+Q+L   AR RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI 
Subjt:  MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLIT

Query:  LLEQINNQTTKQTKVTIQRRRSVLDDDD
        +L++++ QT K T V   RR+ +  D+D
Subjt:  LLEQINNQTTKQTKVTIQRRRSVLDDDD

Arabidopsis top hitse value%identityAlignment
AT1G29850.1 double-stranded DNA-binding family protein7.0e-4783.72Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGV---GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
        M DPELEAIRQRRMQELMA++G+   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
Subjt:  MDDPELEAIRQRRMQELMAQRGV---GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER

Query:  LITLLEQINNQTTKQTKVTIQRRRSVLDD
        LITLLEQIN+QTTKQTKVT QRRR V DD
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSVLDD

AT1G29850.2 double-stranded DNA-binding family protein9.1e-4783.08Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGV----GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE
        M DPELEAIRQRRMQELMA++G+    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE
Subjt:  MDDPELEAIRQRRMQELMAQRGV----GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE

Query:  RLITLLEQINNQTTKQTKVTIQRRRSVLDD
        RLITLLEQIN+QTTKQTKVT QRRR V DD
Subjt:  RLITLLEQINNQTTKQTKVTIQRRRSVLDD

AT1G29850.3 double-stranded DNA-binding family protein5.5e-4480.95Show/hide
Query:  MDDPELEAIRQRRMQELMAQRGV---GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
        M DPELEAIRQRRMQELMA++G+   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER
Subjt:  MDDPELEAIRQRRMQELMAQRGV---GSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEER

Query:  LITLLEQINNQTTKQTKVTIQRRRSV
        LITLLEQIN+QTTKQTKVT+    +V
Subjt:  LITLLEQINNQTTKQTKVTIQRRRSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCGTGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGA
AGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAATGCAAGCTAGAGAAAGACTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGA
GAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGGTTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATCAACAACCAGACCACA
AAACAGACGAAAGTTACTATACAAAGGCGTCGGAGCGTTCTTGATGATGATGATTAG
mRNA sequenceShow/hide mRNA sequence
GGAATTTGAGGCACGACCTGGAGGTCCGATACGCGCTGCAGGGAAAAGGTGGGTTGCGCCACATAAACGCAACCGAGGAAATCCGTACCTCGTTTTCTCTCTGCAGCTTA
TACGAAATTATTGAACTTCAGTTCTACTGACTGCTACCACGATCCTCGAAGCAATGGATGATCCTGAACTAGAAGCCATCAGGCAGAGAAGAATGCAGGAACTCATGGCC
CAGCGTGGCGTGGGAAGCCAAAATAATCCTGAACAACAGAAGGCCCAGGAAGAAGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGTCAGATTCTGTCAAT
GCAAGCTAGAGAAAGACTTGCTCGAATTGCATTGGTTAAACCTGAGAAGGCGAGAGGTGTCGAAGATGTTATACTGAGAGCTGCACAGATGGGCCAAATTGTAGAGAAGG
TTTCTGAAGAGAGGCTTATTACATTGCTAGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTTACTATACAAAGGCGTCGGAGCGTTCTTGATGATGATGATTAG
AAATTGAGATGGGTTGCACACCTTATATGATATATGATTATACCCGCACTCTTGGTTGCGTGTTTATTGCTTGTGCGGTACAATATCTTCCTTTTTATCTATTTACTCTG
CTGCCACTTTATCACGATCCCCCTCATATTCTCACCTCAGAATTCAAGAGCTCCTCGCCACTACCTGGTATTACACCATTGTTAAGGTCAAATTCGCTAAACTATTTATC
TGTATGACAGAGTATCAACCTTGAATTATTATTTTTCTTTCTTATTTGTGATTGCTTAGAGAGGGATCCATTGAATATAGCTCTTGATAAGGGAACTAGAGTCATTATAG
AGCCAGGTTTTGATCCTCAGACTTTTGGGTTATAGACCTACCATGCTTCCGCTGACCCTCAAAAGGGGTGGACACTGAGTGATGTGCCAGCGAGGACGTTGGGCCCCAAA
AGGGGTGGATTGTGAGATCCCACATCAATTAGAGA
Protein sequenceShow/hide protein sequence
MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTT
KQTKVTIQRRRSVLDDDD