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Carg15469 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15469
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionrho GDP-dissociation inhibitor 1-like
Genome locationCarg_Chr06:10094089..10094537
RNA-Seq ExpressionCarg15469
SyntenyCarg15469
Gene Ontology termsGO:0007266 - Rho protein signal transduction (biological process)
GO:0050790 - regulation of catalytic activity (biological process)
GO:0005829 - cytosol (cellular component)
GO:0016020 - membrane (cellular component)
GO:0005094 - Rho GDP-dissociation inhibitor activity (molecular function)
InterPro domainsIPR000406 - Rho protein GDP-dissociation inhibitor
IPR014756 - Immunoglobulin E-set
IPR024792 - Rho GDP-dissociation inhibitor domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597654.1 Rho GDP-dissociation inhibitor 1, partial [Cucurbita argyrosperma subsp. sororia]9.8e-3894.62Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        +S VVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
KAG7029095.1 Rho GDP-dissociation inhibitor 1 [Cucurbita argyrosperma subsp. argyrosperma]7.5e-46100Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHEFLLCVDA
        MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHEFLLCVDA
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHEFLLCVDA

Query:  I
        I
Subjt:  I
XP_022932679.1 rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita moschata]2.6e-3895.7Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIE+DEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
XP_022972014.1 rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita maxima]2.2e-3794.62Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDD SLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
XP_023538815.1 rho GDP-dissociation inhibitor 1-like isoform X1 [Cucurbita pepo subsp. pepo]3.4e-3895.7Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
TrEMBL top hitse value%identityAlignment
A0A0A0KU57 Uncharacterized protein4.2e-2676.84Show/hide
Query:  MSAVVGSLSTK-NVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEV-DLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MS VVGSLSTK NVKFNPQV EE+L  ++ DRE E+IIEEDE++KLK E E+ DLGP FS+KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTK-NVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEV-DLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
A0A1S3BYU4 rho GDP-dissociation inhibitor 1-like7.9e-2574.74Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSK-SMNDREGEEIIEEDEDD-KLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MS  VGSLSTK+VKFNPQV EEEL + +M DRE E+I EE+E++ KLK E E+DLGP FS+KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSK-SMNDREGEEIIEEDEDD-KLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
A0A6J1CUH4 rho GDP-dissociation inhibitor 1-like4.0e-2978.72Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREG-EEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MSA+VGSLSTK+VKFNP+  +EE+ ++MN+REG EEI+EEDEDDKLKPE E+DLGP+FS+KEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREG-EEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
A0A6J1EXP3 rho GDP-dissociation inhibitor 1-like isoform X11.2e-3895.7Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIE+DEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
A0A6J1IA85 rho GDP-dissociation inhibitor 1-like isoform X11.1e-3794.62Show/hide
Query:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
        MSAVVGSLSTKNVKFNPQVGEEEL KSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDD SLRKWKEQLLGSVDLSAIG   E
Subjt:  MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHE
SwissProt top hitse value%identityAlignment
Q9SFC6 Rho GDP-dissociation inhibitor 11.8e-1048.1Show/hide
Query:  KNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
        +N     +  ++ LS+ M++       EE++DD      ++ LGP+++IKE LEKDKDDESLRKWKEQLLGSVD++ IG
Subjt:  KNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
Arabidopsis top hitse value%identityAlignment
AT1G12070.1 Immunoglobulin E-set superfamily protein4.9e-1147.83Show/hide
Query:  EEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
        EE   + ++ +     +   +DD+ + + +++LGP  ++KEQLEKDKDDESLR+WKEQLLGSVDL  +G
Subjt:  EEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
AT1G62450.1 Immunoglobulin E-set superfamily protein4.1e-1045.71Show/hide
Query:  GEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
        GE      ++ +     +   EDD+   + +++LGP  ++KEQLE+DKDDESLR+WKEQLLG VDL  +G
Subjt:  GEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
AT3G07880.1 Immunoglobulin E-set superfamily protein1.3e-1148.1Show/hide
Query:  KNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG
        +N     +  ++ LS+ M++       EE++DD      ++ LGP+++IKE LEKDKDDESLRKWKEQLLGSVD++ IG
Subjt:  KNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACCCTCAAGTAGGGGAGGAAGAGCTCAGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTAT
TGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTCGGTCCTCGATTCTCTATCAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGCTTGAGAA
AATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGGTGAACATGAATTTCTTCTTTGTGTTGATGCTATTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAGCATCTATACTTCTGGTGGCCTAAAACTTTCTCTCTTCTTTCTTCATATATTTTACAATGTCAGCTGTGGTTGGTTCTCTCTCAACCAAGAACGTTAAGTTCAACC
CTCAAGTAGGGGAGGAAGAGCTCAGTAAGTCTATGAACGATCGAGAAGGAGAAGAGATTATTGAAGAAGACGAAGATGACAAACTTAAGCCTGAGGGAGAAGTCGATCTC
GGTCCTCGATTCTCTATCAAGGAACAACTCGAGAAAGATAAGGATGATGAAAGCTTGAGAAAATGGAAGGAACAGTTGTTGGGTAGTGTTGATCTCTCTGCCATTGGAGG
TGAACATGAATTTCTTCTTTGTGTTGATGCTATTTAA
Protein sequenceShow/hide protein sequence
MSAVVGSLSTKNVKFNPQVGEEELSKSMNDREGEEIIEEDEDDKLKPEGEVDLGPRFSIKEQLEKDKDDESLRKWKEQLLGSVDLSAIGGEHEFLLCVDAI