; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg15509 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15509
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 35 kDa protein
Genome locationCarg_Chr06:9835249..9839213
RNA-Seq ExpressionCarg15509
SyntenyCarg15509
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597615.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]8.8e-16388.15Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRR +S    + N  L+       
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA

Query:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
                            + VTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
Subjt:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA

Query:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
Subjt:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        KEDYYQRSSSEKEDRY+RRSSDKERSRRRDSNDRDDHSRKRHKSRR
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

KAG7029056.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita argyrosperma subsp. argyrosperma]1.8e-192100Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD

Query:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
        YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
Subjt:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL

Query:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSNDKE
        RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSNDKE
Subjt:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSNDKE

Query:  DYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        DYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
Subjt:  DYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

XP_022936561.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita moschata]1.7e-16187.57Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRR +S    + N  L+       
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA

Query:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
                            + VTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
Subjt:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA

Query:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSV REEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
Subjt:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        KEDYYQRSSSEKEDRY+RRSSDKERSRRRDSNDRDDHSRKRHKSRR
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

XP_022972289.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita maxima]1.0e-15886.42Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDPLRDPKVFGDPYCTLFVGRLSHLTTED+LRR +S    + N  L+       
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA

Query:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
                            + VTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
Subjt:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA

Query:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSV REEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSP+ YRGGHSHKGNYEKMKHESRRGSND
Subjt:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        KEDYYQRSSSEKEDRY+RRSSDK+RSRRRDSNDRDDHSRKRHKSRR
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

XP_023538864.1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Cucurbita pepo subsp. pepo]2.6e-15986.42Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDPLRDPKVFGDPYCTLFVGRLSHLTTED+LRR +S    + N  L+       
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA

Query:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
                            + VTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
Subjt:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA

Query:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSV REE S VKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
Subjt:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        KEDYYQRSSSEKEDRY+RRSSDK+RSRRRDSNDRDDHSRKRHKSRR
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

TrEMBL top hitse value%identityAlignment
A0A1S3AXF1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.0e-13775.91Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD
        MSGSNV+KVFYA+NYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDP  DPKVFGDPYCTLFVGRLSHLTTED LRR +S                  
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD

Query:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
            GQ V ++ +  H    VTGSSRGYAFVEYETEKEMR AYKDAHHSMIDDCEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
Subjt:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL

Query:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHS-RSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND-
        RPIP+DDLKRLGITPPPEGRYMSRFQ+PSPPRRETDS  REEGS+  +  EKDGH+ R+SS D DDWSHTR  + YRGGHSHKGN EKMKHESRR SND 
Subjt:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHS-RSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND-

Query:  -----------KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
                   KEDYYQR S+EKED YRR SSDK+RSRRRDS DRDDHSRK HKS R
Subjt:  -----------KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

A0A1S4DT11 U11/U12 small nuclear ribonucleoprotein 35 kDa protein3.4e-13675.35Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD
        MSGSNV+KVFYA+NYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDP  DPKVFGDPYCTLFVGRLSHLTTED LRR +S                  
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD

Query:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
            GQ V ++ +  H      GSSRGYAFVEYETEKEMR AYKDAHHSMIDDCEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
Subjt:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL

Query:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHS-RSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND-
        RPIP+DDLKRLGITPPPEGRYMSRFQ+PSPPRRETDS  REEGS+  +  EKDGH+ R+SS D DDWSHTR  + YRGGHSHKGN EKMKHESRR SND 
Subjt:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHS-RSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND-

Query:  -----------KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
                   KEDYYQR S+EKED YRR SSDK+RSRRRDS DRDDHSRK HKS R
Subjt:  -----------KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

A0A5A7VKF1 U11/U12 small nuclear ribonucleoprotein 35 kDa protein1.3e-13575.35Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD
        MSGSNV+KVFYA+NYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDP  DPKVFGDPYCTLFVGRLSHLTTED LRR +S                  
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGD

Query:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
            GQ V ++ +  H    VTGSSRGYAFVEYETEKEMR AYKDAHHSMIDDCEIIVDYNRQ+LM GWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL
Subjt:  YLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPL

Query:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHS-RSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND-
        RPIP+DDLKRLGITPPPEGRYMSRFQ+PSPPRR TDS  REEGS+  +  EKDGH+ R+SS D DDWSHTR  + YRGGHSHKGN EKMKHESRR S D 
Subjt:  RPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHS-RSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND-

Query:  -----------KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
                   KEDYYQR S+EKED YRR SSDK+RSRRRDS DRDDHSRK HKS R
Subjt:  -----------KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

A0A6J1F7T7 U11/U12 small nuclear ribonucleoprotein 35 kDa protein8.0e-16287.57Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRR +S    + N  L+       
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA

Query:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
                            + VTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
Subjt:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA

Query:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSV REEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
Subjt:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        KEDYYQRSSSEKEDRY+RRSSDKERSRRRDSNDRDDHSRKRHKSRR
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

A0A6J1IB25 U11/U12 small nuclear ribonucleoprotein 35 kDa protein4.8e-15986.42Show/hide
Query:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA
        MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCS+AGLYDPLRDPKVFGDPYCTLFVGRLSHLTTED+LRR +S    + N  L+       
Subjt:  MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVA

Query:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
                            + VTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA
Subjt:  GDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRA

Query:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSV REEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSP+ YRGGHSHKGNYEKMKHESRRGSND
Subjt:  PLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR
        KEDYYQRSSSEKEDRY+RRSSDK+RSRRRDSNDRDDHSRKRHKSRR
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHKSRR

SwissProt top hitse value%identityAlignment
Q16560 U11/U12 small nuclear ribonucleoprotein 35 kDa protein3.7e-3947.55Show/hide
Query:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT
        A+ Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  T ED L+ V S   D+    L+ D                
Subjt:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT

Query:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL
                   VTG S+GYAF+EY+ E+ +  AY+DA   +ID  EI VDY  ++ + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  +DL
Subjt:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL

Query:  KRLG
         R G
Subjt:  KRLG

Q1LZH0 U11/U12 small nuclear ribonucleoprotein 35 kDa protein3.1e-3846.57Show/hide
Query:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT
        A+ Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  T E+ L+ V S   D+    L+ D                
Subjt:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT

Query:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL
                   VTG S+GYAF+EY+ E+ +  AY+DA   +ID  EI VDY  ++ + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  +D 
Subjt:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL

Query:  KRLG
         R G
Subjt:  KRLG

Q5U1W5 U11/U12 small nuclear ribonucleoprotein 35 kDa protein1.0e-3640.68Show/hide
Query:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT
        A+ Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  T E+ L+ V S   D+    L+ D                
Subjt:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT

Query:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL
                   VTG S+GYAF+EY+ E+ +  AY+DA   +ID  EI VDY  ++ + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  ++ 
Subjt:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL

Query:  KRLGITPPPE-GRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTR
         R G     E  R   R   P P  R+ D              EK    R+     +DW   R
Subjt:  KRLGITPPPE-GRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTR

Q8VY74 U11/U12 small nuclear ribonucleoprotein 35 kDa protein2.1e-8254.52Show/hide
Query:  GSN-VSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAG
        G+N V+KVFYA +YHPIQAGSIDGTD+ PHDN V RALLC  AGLYDP  D K  GDPYCTLFVGRLSH TTED LR V+S    + N  L+        
Subjt:  GSN-VSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAG

Query:  DYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAP
                           + VTG+SRGY FVEYETEKEM  AY+DAHHS+ID  EIIVDYNRQQLMPGWIPRRLGGGLGG+KESGQLRFGGR+RPFRAP
Subjt:  DYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAP

Query:  LRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRE-TDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        LRPIPH+DLK+LGI  PPEGRYMSR Q+PSPPRR+ + S   EE    K SVE++   +  S+     SH  S       H+H  +  + K        +
Subjt:  LRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRE-TDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHK
             +  +   EDRY     +   S +R     +D SRKRHK
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHK

Q9D384 U11/U12 small nuclear ribonucleoprotein 35 kDa protein1.3e-3640.68Show/hide
Query:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT
        A+ Y P++AGSIDGTD  PHD AV+RA+L      Y P  +  V GDP  TLFV RL+  T E+ L+ V S   D+    L+ D                
Subjt:  AENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAGDYLMTGQSVT

Query:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL
                   VTG S+GYAF+EY+ E+ +  AY+DA   +ID  EI VDY  ++ + GWIPRRLGGGLGGKKESGQLRFGGR+RPFR P+  P+  ++ 
Subjt:  EVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLR-PIPHDDL

Query:  KRLGITPPPE-GRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTR
         R G     E  R   R   P P  R+ D              EK    R+     +DW   R
Subjt:  KRLGITPPPE-GRYMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTR

Arabidopsis top hitse value%identityAlignment
AT2G43370.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.5e-8354.52Show/hide
Query:  GSN-VSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAG
        G+N V+KVFYA +YHPIQAGSIDGTD+ PHDN V RALLC  AGLYDP  D K  GDPYCTLFVGRLSH TTED LR V+S    + N  L+        
Subjt:  GSN-VSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSI--DLTNCLLLTDSDEVAG

Query:  DYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAP
                           + VTG+SRGY FVEYETEKEM  AY+DAHHS+ID  EIIVDYNRQQLMPGWIPRRLGGGLGG+KESGQLRFGGR+RPFRAP
Subjt:  DYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAP

Query:  LRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRE-TDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND
        LRPIPH+DLK+LGI  PPEGRYMSR Q+PSPPRR+ + S   EE    K SVE++   +  S+     SH  S       H+H  +  + K        +
Subjt:  LRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRE-TDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSND

Query:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHK
             +  +   EDRY     +   S +R     +D SRKRHK
Subjt:  KEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRDDHSRKRHK

AT3G50670.1 U1 small nuclear ribonucleoprotein-70K1.9e-1429.05Show/hide
Query:  YDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDA
        YDP  DP   GDPY TLFV RL++ ++E  ++R                 +   +L+T Q              +T   +GYAF+EY   ++M+ AYK A
Subjt:  YDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGDYLMTGQSVTEVTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDA

Query:  HHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSV
            ID   ++VD  R + +P W PRRLGGGLG  +  G     G ++                      P+GR  S+ + PS PR E +   RE+G   
Subjt:  HHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPHDDLKRLGITPPPEGRYMSRFQVPSPPRRETDSVHREEGSSV

Query:  KDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSNDKEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRD-DHSRKRHK
        + S E             +    RS D  R    H+        +  +G  D++   +R      DR  R   D++R R R S D D D SRK+ +
Subjt:  KDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSNDKEDYYQRSSSEKEDRYRRRSSDKERSRRRDSNDRD-DHSRKRHK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGGGAGCAACGTAAGCAAGGTCTTCTACGCCGAGAATTACCATCCAATTCAAGCCGGCAGCATCGACGGCACCGATATTCTTCCCCACGACAATGCCGTCTACCG
AGCATTGCTATGTTCCGCTGCTGGCCTCTATGATCCCCTTCGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACCCTCTTCGTTGGTCGCCTTTCTCATCTGACTACCG
AAGATAATCTTCGTAGGGTATTGTCTATTGACCTCACTAATTGCTTGTTATTGACTGATTCTGATGAGGTTGCTGGTGATTACCTAATGACTGGACAGTCAGTGACCGAA
GTCACTGTGAATGGCCACCATAACTATGAAGTAACTGGTTCTTCACGTGGTTATGCTTTTGTTGAATATGAAACTGAAAAAGAGATGCGACATGCATATAAGGATGCTCA
TCATTCAATGATAGATGATTGCGAAATTATAGTTGACTACAATCGACAACAGCTAATGCCCGGATGGATTCCACGAAGATTAGGAGGGGGACTTGGGGGTAAGAAGGAAT
CTGGACAACTTCGATTTGGAGGAAGAGAAAGACCTTTTCGAGCTCCCTTACGTCCGATACCTCATGACGATTTGAAAAGGCTTGGCATTACTCCTCCACCTGAAGGAAGA
TACATGTCCAGGTTTCAGGTACCTTCTCCTCCGAGAAGAGAAACAGATTCGGTACATAGGGAAGAAGGCTCCAGTGTGAAAGATTCCGTGGAGAAGGATGGACATAGTCG
AAGTAGTTCTACAGATGGAGATGATTGGTCTCATACGAGGAGCCCTGATGGCTACAGAGGAGGGCACTCTCATAAGGGGAACTACGAGAAGATGAAACATGAATCTAGAA
GGGGTTCAAACGACAAGGAAGATTATTATCAGAGGAGCTCTTCTGAGAAGGAAGATCGTTATCGGAGGCGCTCATCGGACAAGGAACGATCTCGCAGAAGGGATTCTAAT
GATAGAGATGATCACTCACGTAAACGTCACAAATCTCGCAGATAG
mRNA sequenceShow/hide mRNA sequence
CGAACAAACTCGTTGGGGTGTTGGTCAATTGTCTCTCTACTCTGTAGCTAAAAATCTCGGCTGAAACGAGGGGGAGTAAGACGACGAGTGGGCTTGGCGCGCCATGAGCG
GGAGCAACGTAAGCAAGGTCTTCTACGCCGAGAATTACCATCCAATTCAAGCCGGCAGCATCGACGGCACCGATATTCTTCCCCACGACAATGCCGTCTACCGAGCATTG
CTATGTTCCGCTGCTGGCCTCTATGATCCCCTTCGCGATCCCAAGGTCTTCGGTGACCCTTATTGCACCCTCTTCGTTGGTCGCCTTTCTCATCTGACTACCGAAGATAA
TCTTCGTAGGGTATTGTCTATTGACCTCACTAATTGCTTGTTATTGACTGATTCTGATGAGGTTGCTGGTGATTACCTAATGACTGGACAGTCAGTGACCGAAGTCACTG
TGAATGGCCACCATAACTATGAAGTAACTGGTTCTTCACGTGGTTATGCTTTTGTTGAATATGAAACTGAAAAAGAGATGCGACATGCATATAAGGATGCTCATCATTCA
ATGATAGATGATTGCGAAATTATAGTTGACTACAATCGACAACAGCTAATGCCCGGATGGATTCCACGAAGATTAGGAGGGGGACTTGGGGGTAAGAAGGAATCTGGACA
ACTTCGATTTGGAGGAAGAGAAAGACCTTTTCGAGCTCCCTTACGTCCGATACCTCATGACGATTTGAAAAGGCTTGGCATTACTCCTCCACCTGAAGGAAGATACATGT
CCAGGTTTCAGGTACCTTCTCCTCCGAGAAGAGAAACAGATTCGGTACATAGGGAAGAAGGCTCCAGTGTGAAAGATTCCGTGGAGAAGGATGGACATAGTCGAAGTAGT
TCTACAGATGGAGATGATTGGTCTCATACGAGGAGCCCTGATGGCTACAGAGGAGGGCACTCTCATAAGGGGAACTACGAGAAGATGAAACATGAATCTAGAAGGGGTTC
AAACGACAAGGAAGATTATTATCAGAGGAGCTCTTCTGAGAAGGAAGATCGTTATCGGAGGCGCTCATCGGACAAGGAACGATCTCGCAGAAGGGATTCTAATGATAGAG
ATGATCACTCACGTAAACGTCACAAATCTCGCAGATAGACTCTCCATTATCCCTAAATTTTCCCAGTTTCTATTTAAGCTATTCAACTAATGTTCATCTGAGGCATGCAG
GCATTTGAGGATGAACTTGATTGCTTAATACACGAGTTCAGGTGACGTATTTGTACCCAGTAATCTGCTGCTGACAAATGCCGTCCATCCATTAACCGAAGGGAACGTTA
TGAAATGAGGTGAGGATATGGTATTTGGTTAATTTAGAAATATGCAAGTATATAGGTCCTGTGAGTGTTATGCTAAGAGGAATTTCAAGAACAAGTTTGGCATTTCAGTG
ATACTCCTTAGTGTTGTTTAGAAATGATCAATGATACTCTTATCTGTTGCGTAATGCGTTATGCCCAAGATTTGAAATCTAGATACAACGATTCT
Protein sequenceShow/hide protein sequence
MSGSNVSKVFYAENYHPIQAGSIDGTDILPHDNAVYRALLCSAAGLYDPLRDPKVFGDPYCTLFVGRLSHLTTEDNLRRVLSIDLTNCLLLTDSDEVAGDYLMTGQSVTE
VTVNGHHNYEVTGSSRGYAFVEYETEKEMRHAYKDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGLGGKKESGQLRFGGRERPFRAPLRPIPHDDLKRLGITPPPEGR
YMSRFQVPSPPRRETDSVHREEGSSVKDSVEKDGHSRSSSTDGDDWSHTRSPDGYRGGHSHKGNYEKMKHESRRGSNDKEDYYQRSSSEKEDRYRRRSSDKERSRRRDSN
DRDDHSRKRHKSRR