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Carg15519 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15519
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L18
Genome locationCarg_Chr06:9764857..9766395
RNA-Seq ExpressionCarg15519
SyntenyCarg15519
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597602.1 50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]3.2e-33100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
KAG7029046.1 50S ribosomal protein L18, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.2e-33100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
XP_022935706.1 50S ribosomal protein L18, chloroplastic [Cucurbita moschata]1.6e-32100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
XP_022972054.1 50S ribosomal protein L18, chloroplastic [Cucurbita maxima]3.2e-33100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
XP_023538937.1 50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo]3.2e-33100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
TrEMBL top hitse value%identityAlignment
A0A5A7UA63 50S ribosomal protein L184.9e-3296Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDY++GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
A0A6J1F5G8 50S ribosomal protein L18, chloroplastic7.6e-33100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLV
A0A6J1GVR5 50S ribosomal protein L18, chloroplastic-like4.9e-3296Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYT+GPTIEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGL F
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
A0A6J1IAC8 50S ribosomal protein L18, chloroplastic1.5e-33100Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
A0A6J1IUS1 50S ribosomal protein L18, chloroplastic-like4.9e-3296Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAAVSTMQKSISEGLDYT+GPTIEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGL F
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
SwissProt top hitse value%identityAlignment
A4XLR4 50S ribosomal protein L181.6e-1660.81Show/hide
Query:  HTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        HTL A S+++  I   L  TS  +IE A+ +G  IA+   EKGITKV FDRGGYPYHGRV+ALADAARE GL F
Subjt:  HTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
P82195 50S ribosomal protein L18, chloroplastic8.1e-3285.33Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLAA STMQK+ISE +DY++GPT+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGLVF
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Q5L3S3 50S ribosomal protein L182.8e-1664.38Show/hide
Query:  TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        T+ + ST+ K    GLD T+   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL F
Subjt:  TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Q8SAY0 50S ribosomal protein L18, chloroplastic1.6e-2471.23Show/hide
Query:  TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        TL + STM KS+S+ L+Y++GPT+EVA+K+GE IAKSCLEKGITKV FDRGG+ YHGR++ALADAARE+GL F
Subjt:  TLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Q9SX68 50S ribosomal protein L18, chloroplastic2.0e-3086.67Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR+EALA AAREHGL F
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
Arabidopsis top hitse value%identityAlignment
AT1G48350.1 Ribosomal L18p/L5e family protein1.4e-3186.67Show/hide
Query:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
        MHTLA+ ST QK ISE  DYTSGPTIEVAKKVGE IAKSCLEKGITKVAFDRGGYPYHGR+EALA AAREHGL F
Subjt:  MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF
AT3G17626.1 structural constituent of ribosome6.8e-1073.68Show/hide
Query:  SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG
        +G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Subjt:  SGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATAGC
AAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCTTG
TGTTCTGA
mRNA sequenceShow/hide mRNA sequence
CATTAGTTGGAGAGGAGAACGAAGCATTCCTTATGAGGGTGTAGAAACCTCTCCCTAGTAGACGCATTTTAAAATCATGATGCTAACGGTGATACGTAACGGGCCAAAGT
GGACGATATTTGTTAGTAGTGGGCTTGAGCTGTTACAAAAACTCTACATATCCTTGACCTGACACTTTGGGAAGGTGACATTTTCAATTTTTGCTATAGGATCTGTCTCC
AACTCAAAAACTTTTGGAATACATCTAGACTGGTTAAAGAAAGATCTCGCTTTATCAAATGGGTATAAATGGCGATCTCACACCCTCTGGGCAATATAAGCCACAGGGTA
TGGTCAATGAGAAATCTGGGAGATTGACTCCCTTTGGAACAGCACTGAGTTCAAAATTATTATATTTAGAAGAGCCAATTGATTCTTGCTGGTATACAGTAGAACAGTTC
ACAGTACATTCATCTTCCTGTGCCTCAGGTTGAAGGAACAACAGAGAGGCCAAGGTTGTCTGTGTTCCGCTCCAACAAGCATCTCTATGTCCAGGTTATCGATGACTCCA
AGATGCACACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACACTTCTGGCCCTACCATTGAAGTAGCAAAGAAAGTGGGGGAAGCCATA
GCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTTGACCGTGGTGGTTATCCATACCATGGACGTGTGGAAGCTCTTGCTGATGCAGCTCGTGAACATGGCCT
TGTGTTCTGAATATCCCTCTTGTGTTTTTCATTGTCTTCTGTATGGTTTGCTGTAACAGTGCCATCAGATGCCCATATTTTTCTGTTGATTAGACCTGAGTTGTAGCTTT
GTTTCACTTGAAATTAAGAGGGAAATTATTCATTCATTCATCATCCTTTTTCAAAAACAAAATTTACATTGAATCTATCATTTGAAAAGAAAATTACAGACGCTTTGATG
TCGATCTTGAAGAAATCGTTATTAGCCTATCTTTTGAATGTATTTTCCTAGAGTGACAGAGATTTGAATATCTGACCTCTTGGTAGATGATATATGTCTTAACTAATTGA
ACCATTGACTTTTAAAATATT
Protein sequenceShow/hide protein sequence
MHTLAAVSTMQKSISEGLDYTSGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF