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Carg15536 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15536
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat (PPR) superfamily protein
Genome locationCarg_Chr11:10695863..10696510
RNA-Seq ExpressionCarg15536
SyntenyCarg15536
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581116.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]1.7e-1173.58Show/hide
Query:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        F A  C  N  V NFL+RGDLF+AHQVFD+MPCK T SL VMISGYLKFGNLS
Subjt:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

KAG6588880.1 putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2798.51Show/hide
Query:  EAQSSSIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNID
        EAQS SIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNID
Subjt:  EAQSSSIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNID

KAG7022639.1 Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]8.1e-54100Show/hide
Query:  EAQSSSIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMIS
        EAQSSSIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMIS
Subjt:  EAQSSSIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMIS

Query:  GYLKFGNLS
        GYLKFGNLS
Subjt:  GYLKFGNLS

XP_022935227.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita moschata]1.7e-1173.58Show/hide
Query:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        F A  C  N  V NFL+RGDLF+AHQVFD+MPCK T SL VMISGYLKFGNLS
Subjt:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

XP_023528913.1 putative pentatricopeptide repeat-containing protein At2g01510 [Cucurbita pepo subsp. pepo]1.7e-1173.58Show/hide
Query:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        F A  C  N  V NFL+RGDLF+AHQVFD+MPCK T SL VMISGYLKFGNLS
Subjt:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

TrEMBL top hitse value%identityAlignment
A0A0A0LBU3 DYW_deaminase domain-containing protein3.2e-0868.89Show/hide
Query:  NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        N  V+NFL RGDL +AHQVFD+MP K T SL +MISG+LKFG LS
Subjt:  NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

A0A5A7V351 Putative pentatricopeptide repeat-containing protein1.2e-0766.67Show/hide
Query:  NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        N  V++FL RGDL +AHQVFD+MP K T SL +MISG+LKFG LS
Subjt:  NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

A0A6J1DTN0 putative pentatricopeptide repeat-containing protein At2g015109.1e-1169.81Show/hide
Query:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        F A  C  N  V+NFL+ GDLF+AHQVFD+MPCK T SL VMISG+LKFGNLS
Subjt:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

A0A6J1F3Z7 putative pentatricopeptide repeat-containing protein At2g015108.2e-1273.58Show/hide
Query:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        F A  C  N  V NFL+RGDLF+AHQVFD+MPCK T SL VMISGYLKFGNLS
Subjt:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

A0A6J1J5B6 putative pentatricopeptide repeat-containing protein At2g015101.1e-1171.7Show/hide
Query:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        F A  C  N  V+NFL+RGD+F+AHQVFD+MPCK T SL VMISGYLKFGNLS
Subjt:  FLAGFC--NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

SwissProt top hitse value%identityAlignment
Q0WNP3 Pentatricopeptide repeat-containing protein At4g18520, chloroplastic2.5e-0536.46Show/hide
Query:  ESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHF---LAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFG
        E+++ D +S  +   ++++L L E      G  L  R  +  LK F   +  F N  +S+ +R GDL YA +VFD MP K T +   MI GYLK+G
Subjt:  ESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHF---LAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFG

Q9FNN7 Pentatricopeptide repeat-containing protein At5g085101.6e-0433.82Show/hide
Query:  QLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        +LG   C+R+   ++        N  ++ + RRGD+  A ++FD MP K  TS   +ISG+ + GN S
Subjt:  QLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS

Arabidopsis top hitse value%identityAlignment
AT1G71420.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.2e-0439.58Show/hide
Query:  NIDVSNFL-----RRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGN
        N+ ++NFL     + G++ YA QVFD MP +   S   +I+GY++ GN
Subjt:  NIDVSNFL-----RRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGN

AT3G51320.1 Pentatricopeptide repeat (PPR) superfamily protein8.1e-0441.86Show/hide
Query:  NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGN
        N  ++  +R GD+  AH++FD+MP K   S  +MIS YL   N
Subjt:  NIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGN

AT4G18520.1 Pentatricopeptide repeat (PPR) superfamily protein1.8e-0636.46Show/hide
Query:  ESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHF---LAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFG
        E+++ D +S  +   ++++L L E      G  L  R  +  LK F   +  F N  +S+ +R GDL YA +VFD MP K T +   MI GYLK+G
Subjt:  ESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHF---LAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFG

AT5G08510.1 Pentatricopeptide repeat (PPR) superfamily protein1.1e-0533.82Show/hide
Query:  QLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS
        +LG   C+R+   ++        N  ++ + RRGD+  A ++FD MP K  TS   +ISG+ + GN S
Subjt:  QLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAGCTCAATCTTCTTCCATTCGTCATCAATCTCTTTTTGAATCTCTTTCTGGAGATGGCAATAGCGAACAAGAAGATTTTACCATTAATCATTCACTCGACTTGAACGA
GTCGAAGCCTCAACAACTGGGCAATGCTCTCTGTAGTAGGAAGACATCTTCAGATTTGAAGCACTTTCTCGCCGGTTTTTGCAATATTGACGTCAGTAACTTTCTACGGA
GAGGAGATCTTTTCTACGCACATCAGGTATTTGATAAAATGCCTTGCAAAACCACGACCTCCTTGATCGTGATGATTTCTGGTTACCTTAAGTTTGGCAACTTATCT
mRNA sequenceShow/hide mRNA sequence
GAAGCTCAATCTTCTTCCATTCGTCATCAATCTCTTTTTGAATCTCTTTCTGGAGATGGCAATAGCGAACAAGAAGATTTTACCATTAATCATTCACTCGACTTGAACGA
GTCGAAGCCTCAACAACTGGGCAATGCTCTCTGTAGTAGGAAGACATCTTCAGATTTGAAGCACTTTCTCGCCGGTTTTTGCAATATTGACGTCAGTAACTTTCTACGGA
GAGGAGATCTTTTCTACGCACATCAGGTATTTGATAAAATGCCTTGCAAAACCACGACCTCCTTGATCGTGATGATTTCTGGTTACCTTAAGTTTGGCAACTTATCT
Protein sequenceShow/hide protein sequence
EAQSSSIRHQSLFESLSGDGNSEQEDFTINHSLDLNESKPQQLGNALCSRKTSSDLKHFLAGFCNIDVSNFLRRGDLFYAHQVFDKMPCKTTTSLIVMISGYLKFGNLS