CuGenDBv2

Gene ID	Carg15567
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	30S ribosomal protein S21, chloroplastic
Genome location	Carg_Chr11:10862373..10864172
RNA-Seq Expression	Carg15567
Synteny	Carg15567
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001911 - Ribosomal protein S21 IPR038380 - Ribosomal protein S21 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6588905.1 30S ribosomal protein S21, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

7.3e-92

100

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
        RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

XP_008450090.2 PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]

2.5e-76

88.2

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPE
        MASLS+FFSFLLPSKPPPPKP QP IA SPSP   +AAQFQTLKSRD SV+LKP QG NHSEPLSAELASVICPSLAF+NTMFF SAYNVQVIVDDNEPE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPE

Query:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE
        ERLL RFRREVMRAGVIQECKRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Subjt:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE

XP_022928327.1 30S ribosomal protein S21, chloroplastic [Cucurbita moschata]

1.6e-91

99.45

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAF+NTMFFNSAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
        RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

XP_022989729.1 30S ribosomal protein S21, chloroplastic-like [Cucurbita maxima]

9.2e-87

96.13

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT    QFQTLKSRDESVSLKPLQG +HSEPLSAELASVICPSLAF+NTMFFNSAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
        RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

XP_023531471.1 30S ribosomal protein S21, chloroplastic [Cucurbita pepo subsp. pepo]

4.4e-89

97.24

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLSTFFSFLLPSKPPPPKPQQP IASPSPATQSAAQFQTLKSRDESVSLKPL+G +HSEPLSAELASVICPSLAF+NTMFFNSAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
        RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BNG4 uncharacterized protein LOC103491780

1.2e-76

88.2

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPE
        MASLS+FFSFLLPSKPPPPKP QP IA SPSP   +AAQFQTLKSRD SV+LKP QG NHSEPLSAELASVICPSLAF+NTMFF SAYNVQVIVDDNEPE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPE

Query:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE
        ERLL RFRREVMRAGVIQECKRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Subjt:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE

A0A5D3C287 Uncharacterized protein

1.2e-76

88.2

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPE
        MASLS+FFSFLLPSKPPPPKP QP IA SPSP   +AAQFQTLKSRD SV+LKP QG NHSEPLSAELASVICPSLAF+NTMFF SAYNVQVIVDDNEPE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIA-SPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPE

Query:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE
        ERLL RFRREVMRAGVIQECKRRR+FENTQD RKRKTREAAKRNRRRRP  R TP+NKQDVPATKQEADDDNWDLPEE
Subjt:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEE

A0A6J1EJK9 30S ribosomal protein S21, chloroplastic

7.8e-92

99.45

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAF+NTMFFNSAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
        RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

A0A6J1F281 30S ribosomal protein S21, chloroplastic-like

2.1e-76

85.56

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLS+FFSFLLPSKPPPPKP QP IASPSPA Q+AAQFQTLKSRD SV+L P Q S HSEPLSAELASVICPSLAF+NTMFF SAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP
        RLL RFRREVMRAGVIQECKRR++FEN  D +KRK+REAAKRNRRRRP  R TP++KQDVPATKQEADDDNWDLPEEGIP
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIP

A0A6J1JQ53 30S ribosomal protein S21, chloroplastic-like

4.4e-87

96.13

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE
        MASLSTFFSFLLPSKPPPPKPQQPFIASPSPAT    QFQTLKSRDESVSLKPLQG +HSEPLSAELASVICPSLAF+NTMFFNSAYNVQVIVDDNEPEE
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEE

Query:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
        RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN
Subjt:  RLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

SwissProt top hits

e value

%identity

Alignment

P48949 30S ribosomal protein S21

5.9e-04

44.83

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Query:  QVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRR
        QV+V  NEP E  L RF+R+V +AG+  + K+ ++FE  Q+  KRK  EA +R +R R
Subjt:  QVIVDDNEPEERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRR

P82024 30S ribosomal protein S21, chloroplastic

3.1e-37

51.89

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Query:  ASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSN----HSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNE
        +SL  F S L PS    P    P   +P+          +L S+  S+S+   +  N      E    +L +V+CPSLAFSNT++F SAYNVQV+VDDNE
Subjt:  ASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSN----HSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNE

Query:  PEERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRR--PFTRITPENKQDVPATKQEADDDNWDLPEEGIP
         EERLL RFRREVMRAGVIQECKRRRYFEN Q+ +KRK REAAKRN RRR  PF    P  ++     K+E D DNWD+PE G P
Subjt:  PEERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRR--PFTRITPENKQDVPATKQEADDDNWDLPEEGIP

Arabidopsis top hits

e value

%identity

Alignment

AT3G27160.1 Ribosomal protein S21 family protein

9.0e-40

51.34

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Query:  SLSTFFSFLLP----SKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEP
        SL++F SF+ P    +KP PP    P +  PSP   + +Q +      ES++++  + S+ +  LS+ELASVICPSLA+SNT+FF+S YNVQV V+DNE 
Subjt:  SLSTFFSFLLP----SKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEP

Query:  EERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPAT----KQEADDDNWDLPEEGIPN
        EERL+ RFRREVMR GVIQECKRRRYFEN QD +KR+TR+AAKRN++RRP  R T E +++  A     K++ ++DNW++P   +P+
Subjt:  EERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPAT----KQEADDDNWDLPEEGIPN

AT5G63300.1 Ribosomal protein S21 family protein

1.6e-20

36.76

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSA-YNVQVIVDDNEPE
        + SLS   S LL SKPP P   +P I  PS  +   +Q  ++ ++        +  + H + ++     V  PSLA +N +FF S+ YNV+V+  D E E
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSA-YNVQVIVDDNEPE

Query:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDV-----PATKQEADDDNWDLPEEGI
        E+L+  F+R   RAGV+QE +RRR+FE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  DD+W+LP E I
Subjt:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDV-----PATKQEADDDNWDLPEEGI

AT5G63300.2 Ribosomal protein S21 family protein

5.3e-16

38.67

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Query:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSA-YNVQVIVDDNEPE
        + SLS   S LL SKPP P   +P I  PS  +   +Q  ++ ++        +  + H + ++     V  PSLA +N +FF S+ YNV+V+  D E E
Subjt:  MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSA-YNVQVIVDDNEPE

Query:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPF
        E+L+  F+R   RAGV+QE +RRR+FE++ + + RKT+EAAK+ R+R  F
Subjt:  ERLLGRFRREVMRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPF

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCTTCTCTCTCCACCTTCTTCTCCTTCCTCTTACCCTCAAAACCACCTCCCCCAAAACCCCAACAGCCCTTCATTGCCTCTCCTTCTCCGGCGACTCAGTCCGCCGC
TCAGTTCCAAACCCTAAAATCCAGAGATGAATCAGTTTCCCTAAAGCCCCTACAGGGTTCGAATCATTCCGAGCCCTTATCGGCGGAATTGGCCTCTGTTATCTGTCCTT
CGCTGGCCTTTTCCAATACTATGTTCTTCAATTCGGCGTATAATGTTCAGGTGATTGTGGATGATAATGAGCCGGAGGAGCGGCTTCTGGGTAGATTCCGGCGAGAGGTT
ATGAGGGCTGGTGTGATTCAGGAGTGTAAGAGACGGAGATACTTTGAGAATACTCAGGATACAAGGAAGCGTAAGACTCGAGAGGCTGCTAAACGCAACCGCCGGAGGCG
CCCATTCACAAGAATTACACCAGAGAACAAGCAGGATGTGCCTGCAACCAAGCAGGAAGCTGATGATGACAACTGGGATTTACCTGAAGAAGGCATTCCAAATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MASLSTFFSFLLPSKPPPPKPQQPFIASPSPATQSAAQFQTLKSRDESVSLKPLQGSNHSEPLSAELASVICPSLAFSNTMFFNSAYNVQVIVDDNEPEERLLGRFRREV
MRAGVIQECKRRRYFENTQDTRKRKTREAAKRNRRRRPFTRITPENKQDVPATKQEADDDNWDLPEEGIPN

Carg15567 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome