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Carg15629 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15629
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionphosphoglucan phosphatase LSF1, chloroplastic isoform X1
Genome locationCarg_Chr11:11237791..11239096
RNA-Seq ExpressionCarg15629
SyntenyCarg15629
Gene Ontology termsGO:0005983 - starch catabolic process (biological process)
GO:0006470 - protein dephosphorylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0043036 - starch grain (cellular component)
GO:0008138 - protein tyrosine/serine/threonine phosphatase activity (molecular function)
InterPro domainsIPR013783 - Immunoglobulin-like fold
IPR014756 - Immunoglobulin E-set
IPR030066 - Putative phosphatase LSF1, chloroplastic
IPR032640 - AMP-activated protein kinase, glycogen-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022729.1 Phosphoglucan phosphatase LSF1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-44100Show/hide
Query:  MGFRYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        MGFRYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  MGFRYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
XP_022928117.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Cucurbita moschata]7.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
XP_022928119.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X3 [Cucurbita moschata]7.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
XP_022989154.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X1 [Cucurbita maxima]7.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
XP_023529353.1 phosphoglucan phosphatase LSF1, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]7.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
TrEMBL top hitse value%identityAlignment
A0A6J1EJ02 phosphoglucan phosphatase LSF1, chloroplastic isoform X13.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
A0A6J1EJY4 phosphoglucan phosphatase LSF1, chloroplastic isoform X33.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
A0A6J1JJ93 phosphoglucan phosphatase LSF1, chloroplastic isoform X33.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
A0A6J1JLL7 phosphoglucan phosphatase LSF1, chloroplastic isoform X23.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
A0A6J1JNK1 phosphoglucan phosphatase LSF1, chloroplastic isoform X13.7e-4298.86Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
SwissProt top hitse value%identityAlignment
F4J117 Phosphoglucan phosphatase LSF1, chloroplastic1.2e-3475Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYI NG WRHS  SP ERDDRGN NN+IV+GD A+VRP++Q  +KDANI+KVIER LTE+ERF LAKAARC+AFSVCPIRL PK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
Arabidopsis top hitse value%identityAlignment
AT3G01510.1 like SEX4 18.8e-3675Show/hide
Query:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
        +YYYKYI NG WRHS  SP ERDDRGN NN+IV+GD A+VRP++Q  +KDANI+KVIER LTE+ERF LAKAARC+AFSVCPIRL PK
Subjt:  RYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK
AT4G16360.1 5'-AMP-activated protein kinase beta-2 subunit protein3.1e-0445.71Show/hide
Query:  YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGD
        Y Y++I +GQWRH+   P  RDD GN  N++ + D
Subjt:  YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGD
AT4G16360.2 5'-AMP-activated protein kinase beta-2 subunit protein3.1e-0445.71Show/hide
Query:  YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGD
        Y Y++I +GQWRH+   P  RDD GN  N++ + D
Subjt:  YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGD
AT4G16360.3 5'-AMP-activated protein kinase beta-2 subunit protein3.1e-0445.71Show/hide
Query:  YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGD
        Y Y++I +GQWRH+   P  RDD GN  N++ + D
Subjt:  YYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTTAGGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCATTCAACAGCTTCGCCTGCTGAAAGGGATGATAGAGGGAATGTCAACAACGTTATAGTCAT
TGGCGACACTGCCAGTGTCAGGCCTTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTTACAGAAAATGAGAGGTTTATGTTGGCGA
AAGCGGCTCGTTGTGTTGCATTTTCGGTATGTCCAATTAGACTAACTCCAAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTTAGGTATTACTACAAGTACATCACAAATGGTCAGTGGAGGCATTCAACAGCTTCGCCTGCTGAAAGGGATGATAGAGGGAATGTCAACAACGTTATAGTCAT
TGGCGACACTGCCAGTGTCAGGCCTTCAGTTCAACCGCAAAAAAAAGATGCAAATATTGTGAAGGTAATTGAAAGACCACTTACAGAAAATGAGAGGTTTATGTTGGCGA
AAGCGGCTCGTTGTGTTGCATTTTCGGTATGTCCAATTAGACTAACTCCAAAGTAATTTGGACTTTGGACATAATTTGCAAAGCTAATAACTTAATCCTATATATATATA
GCAAAATTTACAATATTTTGTATCTTAGTTTTAATCCTAAATTACAGACAAATAAATATAAATAAATATTCCTTAGTGTTTTGAACGT
Protein sequenceShow/hide protein sequence
MGFRYYYKYITNGQWRHSTASPAERDDRGNVNNVIVIGDTASVRPSVQPQKKDANIVKVIERPLTENERFMLAKAARCVAFSVCPIRLTPK