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Carg15800 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15800
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionlight-harvesting complex-like protein OHP2, chloroplastic
Genome locationCarg_Chr04:18990772..18992866
RNA-Seq ExpressionCarg15800
SyntenyCarg15800
Gene Ontology termsGO:0006850 - mitochondrial pyruvate transmembrane transport (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0031305 - integral component of mitochondrial inner membrane (cellular component)
GO:0016301 - kinase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0050833 - pyruvate transmembrane transporter activity (molecular function)
InterPro domainsIPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032876.1 Light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.4e-90100Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
        MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG

Query:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
Subjt:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

XP_022963822.1 light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita moschata]5.5e-9099.47Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
        MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQ SG
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG

Query:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
Subjt:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

XP_022990469.1 light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita maxima]1.3e-8696.32Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
        MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +Q S 
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG

Query:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
Subjt:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

XP_023535438.1 light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo]9.7e-7991.58Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
        MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAH+SIRFSSSKPFVFTIR SQTDGPIRRPAAPSLREPS     PPLKP       PVAQ S 
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG

Query:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
Subjt:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

XP_023551626.1 light-harvesting complex-like protein OHP2, chloroplastic [Cucurbita pepo subsp. pepo]7.9e-7385.57Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVA
        MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSSSKPFVFTIRSSQT+GP+RRPAAPSLREPSPPSPP   PPLKP PP S T P  
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVA

Query:  QSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
             AY AK DN ITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDL+
Subjt:  QSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

TrEMBL top hitse value%identityAlignment
A0A1S3B3J8 proline-rich receptor-like protein kinase PERK143.5e-6678.28Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSA----AVSPSASAASSTSSSSA-HSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKPPPSSAT
        MSGACS PFA IKIP+ SSS A    A SPSASA+SS SSSS+ HSS+RF SSKPF+FTIRSSQT+GP+RRP+APSLR+PSPPSPP   PPLKP P S +
Subjt:  MSGACSFPFAKIKIPTVSSSSA----AVSPSASAASSTSSSSA-HSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKPPPSSAT

Query:  APVAQSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
         P       + V KQDN ITLEFQR KAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGI+DL+
Subjt:  APVAQSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

A0A6J1FIC8 light-harvesting complex-like protein OHP2, chloroplastic8.5e-7385.05Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVA
        MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSS+KPFVFTIRSSQT+GP+RRPAAPSLREPSPPSPP   PPLKP PP S T P  
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVA

Query:  QSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
             AY AK DN ITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDL+
Subjt:  QSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

A0A6J1HG91 light-harvesting complex-like protein OHP2, chloroplastic2.6e-9099.47Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
        MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQ SG
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG

Query:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
Subjt:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

A0A6J1JS47 light-harvesting complex-like protein OHP2, chloroplastic6.1e-8796.32Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG
        MSGACSFPFAKIKIPTVSSSSAAVSPSASA SSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKP P+SATAP +Q S 
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSG

Query:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
Subjt:  KAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

A0A6J1K1U3 light-harvesting complex-like protein OHP2, chloroplastic5.0e-7385.57Show/hide
Query:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVA
        MSGACS PFAKIKIP  SSS A  SPSASA SS SSSSAHSSIRFSSSKPFVFTIRSSQT+GP+RRPAAPSLREPSPPSPP   PPLKP PPSS T P  
Subjt:  MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPP---PPLKP-PPSSATAPVA

Query:  QSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
             AY AK DN ITLEFQRQKAKELQEYFKQKKLDE DQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDL+
Subjt:  QSSGKAYVAKQDNTITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

SwissProt top hitse value%identityAlignment
Q9FEC1 Light-harvesting complex-like protein OHP2, chloroplastic4.0e-4366.46Show/hide
Query:  ASSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPP--PPLKPPPSSATAPVAQSSGKAYVAKQDNTITLEFQRQKAKELQEY
        +SS+SSS+A SS RFS ++KP VF IR SQT+GP+RRP+A P+LREP  P PP  P   PPPS          GK       +  T+EFQRQKAKELQEY
Subjt:  ASSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPP--PPLKPPPSSATAPVAQSSGKAYVAKQDNTITLEFQRQKAKELQEY

Query:  FKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        FKQKKL+ A QGPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DL+
Subjt:  FKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD

Arabidopsis top hitse value%identityAlignment
AT1G34000.1 one-helix protein 22.8e-4466.46Show/hide
Query:  ASSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPP--PPLKPPPSSATAPVAQSSGKAYVAKQDNTITLEFQRQKAKELQEY
        +SS+SSS+A SS RFS ++KP VF IR SQT+GP+RRP+A P+LREP  P PP  P   PPPS          GK       +  T+EFQRQKAKELQEY
Subjt:  ASSTSSSSAHSSIRFS-SSKPFVFTIRSSQTDGPIRRPAA-PSLREPSPPSPP--PPLKPPPSSATAPVAQSSGKAYVAKQDNTITLEFQRQKAKELQEY

Query:  FKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD
        FKQKKL+ A QGPFFGF  KNEISNGRWAMFGFAVG+LTEYATGS+ VDQVKILLSNFGI+DL+
Subjt:  FKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGCCAGTTCCACTTCTTCATC
GTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTGAGAG
AGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCACCTCCTTCTTCGGCGACGGCTCCTGTTGCTCAGTCGTCGGGGAAGGCGTATGTTGCAAAACAGGATAATACG
ATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGAAGAA
TGAAATTTCCAATGGCAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTCCTTTCAAATT
TTGGGATAGTTGATCTCGATTGA
mRNA sequenceShow/hide mRNA sequence
CACATCCTATCCACACCAAATATATCCACTCGATTTTGACTTCAATTCCTCTCATCCGAATCCATTTCAGTTCCACAAGAATCTGATAGAGAAATTTCAGAGATACAAGG
CGAAATGTCGGGGGCCTGTTCATTCCCCTTTGCCAAAATCAAAATCCCCACCGTTTCCTCGTCGTCGGCGGCCGTTTCTCCGTCGGCTTCGGCTGCCAGTTCCACTTCTT
CATCGTCCGCTCACAGTTCCATCAGATTCTCCTCCTCCAAACCTTTTGTCTTCACCATTCGGAGCTCTCAGACCGACGGCCCTATCAGGAGACCGGCGGCTCCTTCTCTG
AGAGAGCCGTCGCCGCCTTCGCCGCCGCCTCCTCTCAAGCCACCTCCTTCTTCGGCGACGGCTCCTGTTGCTCAGTCGTCGGGGAAGGCGTATGTTGCAAAACAGGATAA
TACGATCACTTTAGAGTTTCAGAGGCAGAAGGCTAAGGAGCTTCAGGAGTATTTTAAGCAGAAGAAGCTTGATGAGGCTGATCAGGGACCGTTCTTTGGCTTCATCGGGA
AGAATGAAATTTCCAATGGCAGGTGGGCAATGTTTGGTTTTGCTGTTGGATTGCTGACAGAGTATGCAACTGGTTCAAACTTTGTTGATCAAGTAAAGATCCTCCTTTCA
AATTTTGGGATAGTTGATCTCGATTGACACGATGAACAAGGTCCATGTTTAATTTTTAATGTATCTACATCTTGTAATTCATTTCATAGTGTTCTTGAGATTTGTTGTTT
GATACACAAATTGCCATTCAAGTTTGTGCTCCTTGCAATGCTTACTGTTCTTCTGTTATATATAAAGTTCTTTCTTAGTTATTTATCGGAGAGATTATAATCCATCTCGA
AAATATGATAGATTGTCTTATTTTTGTCGATAATAATATCGATAAATGTTGTATTTCTAGTTGCCTACCTTGAAATTTAGATGAACGGATCAAAATGTGATGCAGTGGAA
TGGATGAATGCTTTCTTTCC
Protein sequenceShow/hide protein sequence
MSGACSFPFAKIKIPTVSSSSAAVSPSASAASSTSSSSAHSSIRFSSSKPFVFTIRSSQTDGPIRRPAAPSLREPSPPSPPPPLKPPPSSATAPVAQSSGKAYVAKQDNT
ITLEFQRQKAKELQEYFKQKKLDEADQGPFFGFIGKNEISNGRWAMFGFAVGLLTEYATGSNFVDQVKILLSNFGIVDLD