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Carg15812 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15812
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNucleolar protein 16, putative
Genome locationCarg_Chr04:19068932..19069366
RNA-Seq ExpressionCarg15812
SyntenyCarg15812
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011656615.1 uncharacterized protein LOC105435757 [Cucumis sativus]8.7e-6486.81Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ TAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNT     TEPENGNDEMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGN VTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_022959632.1 uncharacterized protein LOC111460648 [Cucurbita moschata]9.9e-7698.61Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNA EPENGNDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_022990795.1 uncharacterized protein LOC111487577 [Cucurbita maxima]2.9e-7597.92Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPEN NDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
         VWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQ PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_023512486.1 uncharacterized protein LOC111777221 [Cucurbita pepo subsp. pepo]5.2e-77100Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

XP_038886392.1 uncharacterized protein LOC120076591 [Benincasa hispida]1.7e-6789.58Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQ MMH SQATAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATV+TTQRVN CVVNATE EN NDEMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        A+W+KNILMGGKCQLPDFSGVILYD NGN VTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

TrEMBL top hitse value%identityAlignment
A0A0A0K8P1 Uncharacterized protein4.2e-6486.81Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ TAQVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNT     TEPENGNDEMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGN VTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A1S3C3W7 uncharacterized protein LOC1034965801.5e-6184.03Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ T QVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTT +     VNATEPEN N+EMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGNVVTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A5A7SQ79 Putative Nucleolar protein 161.5e-6184.03Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQ ++HSSQ T QVGMAG SLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTT +     VNATEPEN N+EMFFSREQ+A
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        ++W KNILMGGKCQLPDFSGVILYD NGNVVTPA+T  PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A6J1H530 uncharacterized protein LOC1114606484.8e-7698.61Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWR RWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNA EPENGNDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
        AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

A0A6J1JR28 uncharacterized protein LOC1114875771.4e-7597.92Show/hide
Query:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA
        MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPEN NDEMFFSREQRA
Subjt:  MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRA

Query:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK
         VWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQ PLLTWK
Subjt:  AVWEKNILMGGKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49000.1 unknown protein4.2e-0843.33Show/hide
Query:  ENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVV------TPARTQLP
        +N  +E   + E+   +W++ ILMGGKC+  DFSGVI YDSNG ++      +P  T LP
Subjt:  ENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSGVILYDSNGNVV------TPARTQLP

AT1G71740.1 unknown protein9.4e-2446.51Show/hide
Query:  QVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQ-RAAVWEKNILMGGKCQL
        ++G+A AS+      L   ASH+++  RRW AC  YG    +PVI L  + T++                NG+  M  S +Q R  +W+KNILMGGKCQL
Subjt:  QVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQ-RAAVWEKNILMGGKCQL

Query:  PDFSGVILYDSNGNVVTPARTQLPLLTWK
        PDFSGVILYD++G VV PA+  LPLLTWK
Subjt:  PDFSGVILYDSNGNVVTPARTQLPLLTWK

AT3G14760.1 unknown protein4.4e-0564.29Show/hide
Query:  VWEKNILMGGKCQLPDFSGVILYDSNGN
        VW++ ILMG KC+LP FSG+ILYD  G+
Subjt:  VWEKNILMGGKCQLPDFSGVILYDSNGN

AT3G18560.1 unknown protein1.5e-0554.55Show/hide
Query:  EQRAAVWEKNILMGGKCQLPDFSGVILYDSNGN
        E+   VW++ ILMGGKC+  D+SGVI YD +G+
Subjt:  EQRAAVWEKNILMGGKCQLPDFSGVILYDSNGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTC
CCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAAC
GAGTGAATACCTGTGTTGTGAATGCCACCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGTAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGT
GGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGCAACTACAAATGATGATGCATTCTTCACAAGCCACAGCTCAGGTTGGCATGGCTGGTGCGAGCCTTCTCTTGTGTGCTTTTGCATTGTTTATGTGTGCTTC
CCATGCTCGGAAATGGCGTCGTCGCTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTTAACCAAGAAGCGACAGTCGTGACTACGCAAC
GAGTGAATACCTGTGTTGTGAATGCCACCGAGCCGGAGAATGGCAACGACGAGATGTTCTTCAGTAGAGAGCAACGAGCTGCTGTGTGGGAGAAGAACATACTCATGGGT
GGGAAGTGTCAGCTACCGGACTTCTCGGGCGTCATATTATACGACTCCAATGGAAACGTCGTAACCCCTGCTAGAACTCAGCTTCCTCTACTCACCTGGAAGTGA
Protein sequenceShow/hide protein sequence
MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVIELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMG
GKCQLPDFSGVILYDSNGNVVTPARTQLPLLTWK