CuGenDBv2

Gene ID	Carg15820
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	cleavage stimulating factor 64
Genome location	Carg_Chr04:19103344..19103716
RNA-Seq Expression	Carg15820
Synteny	Carg15820
Gene Ontology terms	GO:0031047 - gene silencing by RNA (biological process) GO:0042868 - antisense RNA metabolic process (biological process) GO:0045892 - negative regulation of transcription, DNA-templated (biological process) GO:0048589 - developmental growth (biological process) GO:0098789 - pre-mRNA cleavage required for polyadenylation (biological process) GO:0005847 - mRNA cleavage and polyadenylation specificity factor complex (cellular component) GO:0003729 - mRNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6602216.1 Cleavage stimulating factor 64, partial [Cucurbita argyrosperma subsp. sororia]

4.6e-36

100

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

KAG7032896.1 Cleavage stimulating factor 64, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.5e-37

100

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKVTF
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKVTF
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKVTF

XP_022963998.1 cleavage stimulating factor 64 [Cucurbita moschata]

4.6e-36

100

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

XP_022990313.1 cleavage stimulating factor 64 [Cucurbita maxima]

3.0e-35

97.65

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTE +SGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

XP_023550987.1 cleavage stimulating factor 64 [Cucurbita pepo subsp. pepo]

1.3e-35

98.82

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTE MSGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C3F6 cleavage stimulating factor 64

2.0e-32

92.86

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLK
        GRGGPGLV NAGGPT HG+SSQ QPIGLHIAITAAAVMAGALGGAQAASNQN LQS TMPNDPLTLHLAKLSRSQLTEVMSGLK
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLK

A0A5D3BZN4 Cleavage stimulating factor 64

2.0e-32

92.86

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLK
        GRGGPGLV NAGGPT HG+SSQ QPIGLHIAITAAAVMAGALGGAQAASNQN LQS TMPNDPLTLHLAKLSRSQLTEVMSGLK
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLK

A0A6J1BWU0 cleavage stimulating factor 64

6.7e-33

91.76

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLV NAGGPTAHGESSQ QPIGLHIAITAAAVMAGALGGAQ A+NQNILQS  MPNDPLTLHLAKLSRSQLTE+MSGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

A0A6J1HJJ0 cleavage stimulating factor 64

2.2e-36

100

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

A0A6J1JSX2 cleavage stimulating factor 64

1.5e-35

97.65

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Query:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTE +SGLKV
Subjt:  GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

SwissProt top hits

e value

%identity

Alignment

Q9M9G6 Cleavage stimulating factor 64

1.3e-12

49.46

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Query:  RGGPGL-----VTNA----GGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        +GGPGL     VT +    GGP    +S+  QP+GLH+A TAA+V+AGALGG Q  S           +DPL LHLAK+SRSQLTE++S +K+
Subjt:  RGGPGL-----VTNA----GGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

Arabidopsis top hits

e value

%identity

Alignment

AT1G71800.1 cleavage stimulating factor 64

9.1e-14

49.46

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Query:  RGGPGL-----VTNA----GGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV
        +GGPGL     VT +    GGP    +S+  QP+GLH+A TAA+V+AGALGG Q  S           +DPL LHLAK+SRSQLTE++S +K+
Subjt:  RGGPGL-----VTNA----GGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKV

Sequences

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CDS sequence

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GGTCGTGGCGGGCCTGGATTGGTTACAAATGCTGGTGGCCCAACAGCCCATGGGGAATCCAGTCAACTTCAACCAATTGGTCTTCATATAGCAATAACTGCTGCTGCCGT
TATGGCAGGAGCCCTTGGTGGTGCACAAGCTGCTTCTAATCAGAATATTTTGCAGAGTACAACAATGCCCAATGATCCTTTAACTCTGCATCTGGCTAAACTTTCTAGGA
GTCAACTTACTGAAGTTATGTCAGGGCTAAAGGTAACCTTTTGA

mRNA sequence

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Protein sequence

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GRGGPGLVTNAGGPTAHGESSQLQPIGLHIAITAAAVMAGALGGAQAASNQNILQSTTMPNDPLTLHLAKLSRSQLTEVMSGLKVTF

Carg15820 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome