; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg15939 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15939
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionF-box/LRR-repeat protein 4
Genome locationCarg_Chr08:7243825..7244135
RNA-Seq ExpressionCarg15939
SyntenyCarg15939
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0010225 - response to UV-C (biological process)
GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domainsIPR032675 - Leucine-rich repeat domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593928.1 F-box/LRR-repeat protein 4, partial [Cucurbita argyrosperma subsp. sororia]7.0e-3197.22Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
KAG7026270.1 F-box/LRR-repeat protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-35100Show/hide
Query:  MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
XP_022930248.1 F-box/LRR-repeat protein 4 isoform X1 [Cucurbita moschata]1.6e-3095.83Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHL+KRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
XP_023000156.1 F-box/LRR-repeat protein 4 isoform X1 [Cucurbita maxima]1.6e-3095.83Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHLVKRCTML+SCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
XP_023514735.1 LOW QUALITY PROTEIN: F-box/LRR-repeat protein 4-like [Cucurbita pepo subsp. pepo]7.0e-3197.22Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
TrEMBL top hitse value%identityAlignment
A0A6J1CA51 F-box/LRR-repeat protein 43.2e-2990.28Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGL HLVKRC+MLESC MVYCPGITAAGVATVVSSCPS+KK+LVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
A0A6J1ER01 F-box/LRR-repeat protein 4 isoform X17.6e-3195.83Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHL+KRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
A0A6J1EWG3 F-box/LRR-repeat protein 4 isoform X27.6e-3195.83Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHL+KRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
A0A6J1KCU6 F-box/LRR-repeat protein 4 isoform X27.6e-3195.83Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHLVKRCTML+SCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
A0A6J1KF37 F-box/LRR-repeat protein 4 isoform X17.6e-3195.83Show/hide
Query:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        ++TDAGLMHLVKRCTML+SCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Subjt:  RLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
SwissProt top hitse value%identityAlignment
Q9C5D2 F-box/LRR-repeat protein 41.1e-2676.06Show/hide
Query:  LTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        +TD GL HLV++C +LE+C MVYCPGIT+AGVATVVSSCP +KK+L+EKWKV+ERT RRAGSVISYLC+DL
Subjt:  LTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
Arabidopsis top hitse value%identityAlignment
AT3G50080.1 VIER F-box proteine 27.8e-0430.77Show/hide
Query:  MRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        +RL  L++TD GL   + +C+ LE+  +V  P  +  G+A+VV  C  ++K+ ++ W+V     +   SV  + C++L
Subjt:  MRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
AT4G15475.1 F-box/RNI-like superfamily protein7.8e-2876.06Show/hide
Query:  LTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL
        +TD GL HLV++C +LE+C MVYCPGIT+AGVATVVSSCP +KK+L+EKWKV+ERT RRAGSVISYLC+DL
Subjt:  LTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATGAGGCTGTACACTCTCAGATTAACGGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGAATCCTGCCAAATGGTCTATTGTCCTGGCATCAC
CGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCGGTCATTT
CCTACCTTTGCGTCGACCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAATGAGGCTGTACACTCTCAGATTAACGGATGCTGGTTTAATGCATTTAGTGAAGAGATGCACCATGCTTGAATCCTGCCAAATGGTCTATTGTCCTGGCATCAC
CGCAGCTGGCGTCGCCACTGTCGTTTCCAGCTGCCCAAGCGTAAAGAAAATTCTGGTCGAGAAATGGAAGGTGAGCGAGAGAACAAAACGACGTGCAGGCTCGGTCATTT
CCTACCTTTGCGTCGACCTCTAG
Protein sequenceShow/hide protein sequence
MAMRLYTLRLTDAGLMHLVKRCTMLESCQMVYCPGITAAGVATVVSSCPSVKKILVEKWKVSERTKRRAGSVISYLCVDL