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Carg15956 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg15956
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionclassical arabinogalactan protein 25-like
Genome locationCarg_Chr08:7339536..7339913
RNA-Seq ExpressionCarg15956
SyntenyCarg15956
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR039346 - Classical arabinogalactan protein 25/26


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593943.1 hypothetical protein SDJN03_13419, partial [Cucurbita argyrosperma subsp. sororia]6.8e-57100Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        PCSSNALLLLSALLAALHAFSLLLH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

KAG7026286.1 hypothetical protein SDJN02_12787, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-57100Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        PCSSNALLLLSALLAALHAFSLLLH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

XP_022958905.1 classical arabinogalactan protein 25-like [Cucurbita moschata]1.1e-3373.6Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MA FWYC+A+I A +A+PLLALP L +   SS FQELSP+IAPLLPS+G  IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSP GLP SFAAPK PL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        P  SN+LLLL+AL  +LHAF L LH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

XP_023006472.1 classical arabinogalactan protein 25-like [Cucurbita maxima]6.2e-3473.6Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MA FWYC+A+I AF+A+PLLALP L +   S  FQELSP+IAPLLPSTG  IPSATGSIPTIPSNPSPPNPDEFEAP PD SALSPFGLP SFAAPK PL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        P  SN+LLL +    +LHAF L LH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

XP_023547783.1 classical arabinogalactan protein 25-like [Cucurbita pepo subsp. pepo]4.3e-3575.2Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MA FWYC+A+I AF+A+PLLALP L +   SS FQELSP+IAPLLPS+G  IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSPFGLP SFAAPK PL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        P  SN+LLLL+AL  +LHAF L LH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

TrEMBL top hitse value%identityAlignment
A0A0A0KBF8 Uncharacterized protein1.1e-3173.02Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPP
        MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG SIPTIPSNPSPPNPD+FEA  PD SALSPFGLP SFA P   
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPP

Query:  LPCSSNALLLLSALLAALHAFSLLLH
        LPC SN LLLL   LA L  FS+ LH
Subjt:  LPCSSNALLLLSALLAALHAFSLLLH

A0A1S3C8K2 classical arabinogalactan protein 253.7e-3273.81Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPP
        MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG SIPTIPSNPSPPNPD+FEA  PD SALSPFGLP SFA P   
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPP

Query:  LPCSSNALLLLSALLAALHAFSLLLH
        LPC SN LLLL   LA L AFS+ LH
Subjt:  LPCSSNALLLLSALLAALHAFSLLLH

A0A5A7SSC0 Classical arabinogalactan protein 253.7e-3273.81Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPP
        MA FWYCSA+I  F+A+PLLALP + +   SSPFQELSPEIAPLLPSTGD+IPSATG SIPTIPSNPSPPNPD+FEA  PD SALSPFGLP SFA P   
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATG-SIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPP

Query:  LPCSSNALLLLSALLAALHAFSLLLH
        LPC SN LLLL   LA L AFS+ LH
Subjt:  LPCSSNALLLLSALLAALHAFSLLLH

A0A6J1H4T0 classical arabinogalactan protein 25-like5.1e-3473.6Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MA FWYC+A+I A +A+PLLALP L +   SS FQELSP+IAPLLPS+G  IPSA+GSIPTIPSNPSPPNPDEFEAP PD SALSP GLP SFAAPK PL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        P  SN+LLLL+AL  +LHAF L LH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

A0A6J1KVY5 classical arabinogalactan protein 25-like3.0e-3473.6Show/hide
Query:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL
        MA FWYC+A+I AF+A+PLLALP L +   S  FQELSP+IAPLLPSTG  IPSATGSIPTIPSNPSPPNPDEFEAP PD SALSPFGLP SFAAPK PL
Subjt:  MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPL

Query:  PCSSNALLLLSALLAALHAFSLLLH
        P  SN+LLL +    +LHAF L LH
Subjt:  PCSSNALLLLSALLAALHAFSLLLH

SwissProt top hitse value%identityAlignment
Q6NN00 Classical arabinogalactan protein 251.5e-0942.02Show/hide
Query:  FWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPLPCS
        F + + L+  F+    + +   +S+ T S  Q+LSPEIAPLLPS GD +PS  GS  TIPS+PSPP+PD  +   PDP A SPF  P   ++P PP    
Subjt:  FWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPLPCS

Query:  SNALLLLSALLAALHAFSL
        S  +LL+S ++++    +L
Subjt:  SNALLLLSALLAALHAFSL

Arabidopsis top hitse value%identityAlignment
AT5G18690.1 arabinogalactan protein 251.0e-1042.02Show/hide
Query:  FWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPLPCS
        F + + L+  F+    + +   +S+ T S  Q+LSPEIAPLLPS GD +PS  GS  TIPS+PSPP+PD  +   PDP A SPF  P   ++P PP    
Subjt:  FWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPLPCS

Query:  SNALLLLSALLAALHAFSL
        S  +LL+S ++++    +L
Subjt:  SNALLLLSALLAALHAFSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCTTGGCCACACCTTTGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCTCCTTTCCAAGAACT
CTCCCCTGAAATTGCTCCATTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGT
TCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCCCCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTA
TCAGCCTTATTAGCAGCACTACATGCCTTCTCTCTGCTCTTACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTGCTTTTGGTATTGTTCAGCACTCATTACGGCTTTCTTGGCCACACCTTTGCTTGCTTTACCATTTTTGACCTCCACCACTACCAGTTCTCCTTTCCAAGAACT
CTCCCCTGAAATTGCTCCATTGCTGCCTTCGACAGGCGATCAGATTCCTTCTGCAACTGGTTCTATTCCCACCATTCCCTCAAACCCCAGCCCTCCAAATCCAGACGAGT
TCGAAGCGCCTGCTCCTGATCCCTCTGCCCTTTCCCCATTCGGCCTGCCAGCTTCCTTCGCAGCGCCTAAGCCCCCCCTGCCTTGCTCTTCAAATGCGCTTCTTCTTCTA
TCAGCCTTATTAGCAGCACTACATGCCTTCTCTCTGCTCTTACATTGA
Protein sequenceShow/hide protein sequence
MACFWYCSALITAFLATPLLALPFLTSTTTSSPFQELSPEIAPLLPSTGDQIPSATGSIPTIPSNPSPPNPDEFEAPAPDPSALSPFGLPASFAAPKPPLPCSSNALLLL
SALLAALHAFSLLLH