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Carg16010 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16010
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TAPETUM DETERMINANT 1-like
Genome locationCarg_Chr07:2357049..2357510
RNA-Seq ExpressionCarg16010
SyntenyCarg16010
Gene Ontology termsNA
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026828.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-63100Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
        IFTYAQDPKFDFKLISSQIACS
Subjt:  IFTYAQDPKFDFKLISSQIACS

XP_022962948.1 uncharacterized protein At1g05835-like [Cucurbita moschata]7.4e-4878.69Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MAP  KLFAALLFVS L K N QC  ++I I Q MTGFQIHGMTEWN T+SNNCLCSQSEVKLDC+GFQTTKSIDP ILA+TDTECLVNNGLPIF S P+
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         FTYAQ+P+F+FK ISSQIACS
Subjt:  IFTYAQDPKFDFKLISSQIACS

XP_023004032.1 protein TAPETUM DETERMINANT 1-like [Cucurbita maxima]2.1e-5588.52Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MAPF KLFAALLFVSLL+KGNCQCVSNDIAI Q M+GFQIHGMTEWNVTISN CLCSQSEVKLDC+GFQTTKSIDPS+LAVTD+ECLVNNGLPIFKSN +
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         FTYA DPKFDFKLISSQI CS
Subjt:  IFTYAQDPKFDFKLISSQIACS

XP_023518832.1 uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo]1.2e-5894.26Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MAPF  LFAALLFVSLL KGN QCV NDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDC+GFQTTKS+DPSILAVTDTECLVNNGLPIFKSNPV
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
        IFTYAQDPKFDFKLISSQIACS
Subjt:  IFTYAQDPKFDFKLISSQIACS

XP_038881121.1 uncharacterized protein At1g05835-like [Benincasa hispida]5.7e-4877.87Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MA F+KL  ALL +SL+  GNCQC+ N+I ISQ+MTGFQIHGMTEW VTISNNC CSQSEVK+DCKGFQTT+SIDPSILAV DTECLVNNGLPIF SNP+
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         F+YAQDP+F+FK ISSQI+CS
Subjt:  IFTYAQDPKFDFKLISSQIACS

TrEMBL top hitse value%identityAlignment
A0A0A0KLZ6 Uncharacterized protein1.6e-4371.31Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        M  F KL AALL +SL+  GNCQC  N+I ISQ MTGFQIHGMTEW VTI+NNC+CSQS++KLDCKGF TT SIDPSILA++D+ECLVNNG PIF S P+
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         F YAQ PKF+FK +SSQI+CS
Subjt:  IFTYAQDPKFDFKLISSQIACS

A0A1S3B1L8 protein TAPETUM DETERMINANT 1-like3.1e-4472.13Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MA  +KL AALL +S +  GNCQCV N+I ISQKMTGFQIHGMTEW+VTI+NNC+CSQS++KLDCKGF TT SIDPSIL+++D ECLVNNG PIF S P+
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         F YAQ PKF+FK ISSQI+CS
Subjt:  IFTYAQDPKFDFKLISSQIACS

A0A5D3CMA8 Protein TAPETUM DETERMINANT 1-like3.1e-4472.13Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MA  +KL AALL +S +  GNCQCV N+I ISQKMTGFQIHGMTEW+VTI+NNC+CSQS++KLDCKGF TT SIDPSIL+++D ECLVNNG PIF S P+
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         F YAQ PKF+FK ISSQI+CS
Subjt:  IFTYAQDPKFDFKLISSQIACS

A0A6J1HGA0 uncharacterized protein At1g05835-like3.6e-4878.69Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MAP  KLFAALLFVS L K N QC  ++I I Q MTGFQIHGMTEWN T+SNNCLCSQSEVKLDC+GFQTTKSIDP ILA+TDTECLVNNGLPIF S P+
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         FTYAQ+P+F+FK ISSQIACS
Subjt:  IFTYAQDPKFDFKLISSQIACS

A0A6J1KP98 protein TAPETUM DETERMINANT 1-like1.0e-5588.52Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MAPF KLFAALLFVSLL+KGNCQCVSNDIAI Q M+GFQIHGMTEWNVTISN CLCSQSEVKLDC+GFQTTKSIDPS+LAVTD+ECLVNNGLPIFKSN +
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQIACS
         FTYA DPKFDFKLISSQI CS
Subjt:  IFTYAQDPKFDFKLISSQIACS

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058356.8e-0426.72Show/hide
Query:  ALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDT---ECLVNNGLPIFKSNPVIFTYA
        ALL + +     C+  S++ A+ Q  T  +     ++ V + N C +C    ++L C+GF  +  +DP+ L V  +    C+VN+GLP+     + F Y+
Subjt:  ALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDT---ECLVNNGLPIFKSNPVIFTYA

Query:  QDPKFDFKLISSQIAC
           +F  + +S    C
Subjt:  QDPKFDFKLISSQIAC

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein4.8e-0526.72Show/hide
Query:  ALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDT---ECLVNNGLPIFKSNPVIFTYA
        ALL + +     C+  S++ A+ Q  T  +     ++ V + N C +C    ++L C+GF  +  +DP+ L V  +    C+VN+GLP+     + F Y+
Subjt:  ALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDT---ECLVNNGLPIFKSNPVIFTYA

Query:  QDPKFDFKLISSQIAC
           +F  + +S    C
Subjt:  QDPKFDFKLISSQIAC

AT4G32090.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein2.6e-1435.29Show/hide
Query:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV
        MA  LK F  +L +S++  G C C    I I    TG +I G  EW VT+ N C C Q  V L C GF   K + P +L      CL+  G  +      
Subjt:  MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPV

Query:  IFTYAQDPKFDFKLISSQI
         FTYA  P + F+ + S++
Subjt:  IFTYAQDPKFDFKLISSQI

AT4G32100.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.1e-0930.25Show/hide
Query:  FLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFT
        FL L     FV+  Y G+       +++ Q  TG  +    EW V + N+  C  +   L C  F++   ID  +L+ +   CL+ NG  I   + + F 
Subjt:  FLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFT

Query:  YAQDPKFDFKLISSQIACS
        Y  D  FD K++   IACS
Subjt:  YAQDPKFDFKLISSQIACS

AT4G32105.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein1.7e-1332.48Show/hide
Query:  KLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTY
        K+   +LF++ + +G   C  N +++ Q  TG  +    EW V ++N C  C     KL C GFQ+   +  S+L+ +   CL+N G  IF     +F Y
Subjt:  KLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTY

Query:  AQDPKFDFKLISSQIAC
          D  FD K+I   I C
Subjt:  AQDPKFDFKLISSQIAC

AT4G32110.1 Beta-1,3-N-Acetylglucosaminyltransferase family protein9.7e-1432.48Show/hide
Query:  KLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTY
        KL   +LF++ + +G   C  N +++ Q  TG  +    EW V ++N C  C     +L C GF +   ID S+L  +   CLVN G  I     ++F Y
Subjt:  KLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNC-LCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTY

Query:  AQDPKFDFKLISSQIAC
          D  FD K+I   + C
Subjt:  AQDPKFDFKLISSQIAC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCCTTCCTCAAGCTTTTCGCTGCCCTTCTCTTCGTTTCTCTCCTTTACAAAGGAAATTGCCAATGTGTTTCGAATGACATAGCAATCAGTCAAAAGATGACTGG
ATTTCAGATTCATGGAATGACAGAATGGAACGTGACAATAAGCAACAACTGTTTGTGTTCTCAGTCTGAAGTGAAGCTTGACTGTAAAGGATTTCAAACTACAAAAAGTA
TCGATCCCTCAATATTAGCCGTTACTGATACCGAATGTTTGGTCAACAATGGACTCCCAATATTCAAATCGAACCCCGTCATCTTCACTTATGCACAAGACCCTAAATTT
GACTTCAAACTAATCTCTTCCCAAATCGCTTGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCCTTCCTCAAGCTTTTCGCTGCCCTTCTCTTCGTTTCTCTCCTTTACAAAGGAAATTGCCAATGTGTTTCGAATGACATAGCAATCAGTCAAAAGATGACTGG
ATTTCAGATTCATGGAATGACAGAATGGAACGTGACAATAAGCAACAACTGTTTGTGTTCTCAGTCTGAAGTGAAGCTTGACTGTAAAGGATTTCAAACTACAAAAAGTA
TCGATCCCTCAATATTAGCCGTTACTGATACCGAATGTTTGGTCAACAATGGACTCCCAATATTCAAATCGAACCCCGTCATCTTCACTTATGCACAAGACCCTAAATTT
GACTTCAAACTAATCTCTTCCCAAATCGCTTGTTCTTAA
Protein sequenceShow/hide protein sequence
MAPFLKLFAALLFVSLLYKGNCQCVSNDIAISQKMTGFQIHGMTEWNVTISNNCLCSQSEVKLDCKGFQTTKSIDPSILAVTDTECLVNNGLPIFKSNPVIFTYAQDPKF
DFKLISSQIACS