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Carg16011 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16011
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein TAPETUM DETERMINANT 1-like
Genome locationCarg_Chr07:2355492..2355941
RNA-Seq ExpressionCarg16011
SyntenyCarg16011
Gene Ontology termsNA
InterPro domainsIPR040361 - Tapetum determinant 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026827.1 hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyrosperma]8.1e-63100Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TFTYAQNPQFNFKPISSQIACS
Subjt:  TFTYAQNPQFNFKPISSQIACS

KAG7026828.1 Protein TAPETUM DETERMINANT 1, partial [Cucurbita argyrosperma subsp. argyrosperma]6.9e-4676.23Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MAP  +L AALLFVS L KGN QC  ++I I+Q MTGFQIHGMTEWN T+SN CLCSQSEVKLDC+GFQTT+SIDP ILA+TDTECLVNNGLPIF S P+
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
         FTYAQ+P+F+FK ISSQIACS
Subjt:  TFTYAQNPQFNFKPISSQIACS

XP_022962948.1 uncharacterized protein At1g05835-like [Cucurbita moschata]3.9e-5793.44Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MAPSA+L AALLFVSFL K N QCFLSNITI QSMTGFQIHGMTEWNTTVSN CLCSQSEVKLDCRGFQTT+SIDPLILAITDTECLVNNGLPIFNSTPI
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TFTYAQNPQFNFKPISSQIACS
Subjt:  TFTYAQNPQFNFKPISSQIACS

XP_023518832.1 uncharacterized protein LOC111782230 [Cucurbita pepo subsp. pepo]2.2e-4777.87Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MAP A L AALLFVS L KGNFQC  ++I I+Q MTGFQIHGMTEWN T+SN CLCSQSEVKLDCRGFQTT+S+DP ILA+TDTECLVNNGLPIF S P+
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
         FTYAQ+P+F+FK ISSQIACS
Subjt:  TFTYAQNPQFNFKPISSQIACS

XP_038881121.1 uncharacterized protein At1g05835-like [Benincasa hispida]2.0e-4574.59Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MA   +L+ ALL +S +  GN QC L+NITI+Q MTGFQIHGMTEW  T+SN C CSQSEVK+DC+GFQTTESIDP ILA+ DTECLVNNGLPIFNS PI
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TF+YAQ+PQFNFKPISSQI+CS
Subjt:  TFTYAQNPQFNFKPISSQIACS

TrEMBL top hitse value%identityAlignment
A0A0A0KLZ6 Uncharacterized protein1.0e-4271.79Show/hide
Query:  QLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYA
        +L+AALL +S +  GN QCFL+NI I+QSMTGFQIHGMTEW  T++N C+CSQS++KLDC+GF TT SIDP ILAI+D+ECLVNNG PIFNS PITF YA
Subjt:  QLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYA

Query:  QNPQFNFKPISSQIACS
        Q+P+FNFKP+SSQI+CS
Subjt:  QNPQFNFKPISSQIACS

A0A1S3B1L8 protein TAPETUM DETERMINANT 1-like9.1e-4471.31Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MA S +L+AALL +SF+  GN QC L+NITI+Q MTGFQIHGMTEW+ T++N C+CSQS++KLDC+GF TT SIDP IL+I+D ECLVNNG PIFNS PI
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TF YAQ P+FNFKPISSQI+CS
Subjt:  TFTYAQNPQFNFKPISSQIACS

A0A5D3CMA8 Protein TAPETUM DETERMINANT 1-like9.1e-4471.31Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MA S +L+AALL +SF+  GN QC L+NITI+Q MTGFQIHGMTEW+ T++N C+CSQS++KLDC+GF TT SIDP IL+I+D ECLVNNG PIFNS PI
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TF YAQ P+FNFKPISSQI+CS
Subjt:  TFTYAQNPQFNFKPISSQIACS

A0A6J1HGA0 uncharacterized protein At1g05835-like1.9e-5793.44Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MAPSA+L AALLFVSFL K N QCFLSNITI QSMTGFQIHGMTEWNTTVSN CLCSQSEVKLDCRGFQTT+SIDPLILAITDTECLVNNGLPIFNSTPI
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TFTYAQNPQFNFKPISSQIACS
Subjt:  TFTYAQNPQFNFKPISSQIACS

A0A6J1KP98 protein TAPETUM DETERMINANT 1-like1.7e-4575.41Show/hide
Query:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI
        MAP A+L AALLFVS L KGN QC  ++I I Q+M+GFQIHGMTEWN T+SNICLCSQSEVKLDCRGFQTT+SIDP +LA+TD+ECLVNNGLPIF S  I
Subjt:  MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPI

Query:  TFTYAQNPQFNFKPISSQIACS
        TFTYA +P+F+FK ISSQI CS
Subjt:  TFTYAQNPQFNFKPISSQIACS

SwissProt top hitse value%identityAlignment
A8MS78 Uncharacterized protein At1g058355.2e-0429.63Show/hide
Query:  EWNTTVSNIC-LCSQSEVKLDCRGFQTTESIDPLILAITDT---ECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIAC
        ++   V N C +C    ++L C+GF  +  +DP  L +  +    C+VN+GLP+     ++F Y+   QF  +P+S    C
Subjt:  EWNTTVSNIC-LCSQSEVKLDCRGFQTTESIDPLILAITDT---ECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIAC

Arabidopsis top hitse value%identityAlignment
AT1G05835.1 PHD finger protein3.7e-0529.63Show/hide
Query:  EWNTTVSNIC-LCSQSEVKLDCRGFQTTESIDPLILAITDT---ECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIAC
        ++   V N C +C    ++L C+GF  +  +DP  L +  +    C+VN+GLP+     ++F Y+   QF  +P+S    C
Subjt:  EWNTTVSNIC-LCSQSEVKLDCRGFQTTESIDPLILAITDT---ECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIAC

AT4G24972.1 tapetum determinant 18.3e-0527.91Show/hide
Query:  QCFLSNITITQSMTGFQIHGMTEWNTTVSNICL--CSQSEVKLDCRGFQTTESIDPLIL-AITDTECLVNNGLPIFNSTPITFTYA
        +C  ++I + Q++T    +G+  +   ++N C+  C  S + ++C  F + + I+P +   I   +CLVNNG P+   + ++F YA
Subjt:  QCFLSNITITQSMTGFQIHGMTEWNTTVSNICL--CSQSEVKLDCRGFQTTESIDPLIL-AITDTECLVNNGLPIFNSTPITFTYA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCCTCTGCCCAGCTTATCGCTGCGCTTCTCTTCGTCTCTTTTCTTCCCAAAGGAAATTTTCAGTGTTTCTTGAGCAACATAACAATCACTCAGAGTATGACTGG
ATTTCAAATTCATGGAATGACAGAATGGAATACAACCGTAAGTAACATCTGTTTGTGTTCTCAATCAGAAGTGAAACTTGATTGCAGAGGATTTCAAACTACAGAAAGCA
TCGATCCTTTGATATTAGCCATTACCGACACTGAATGCTTAGTCAACAATGGACTCCCAATCTTCAACTCAACCCCTATCACCTTCACTTATGCACAAAACCCTCAATTC
AACTTCAAACCAATCTCTTCTCAGATCGCTTGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCCTCTGCCCAGCTTATCGCTGCGCTTCTCTTCGTCTCTTTTCTTCCCAAAGGAAATTTTCAGTGTTTCTTGAGCAACATAACAATCACTCAGAGTATGACTGG
ATTTCAAATTCATGGAATGACAGAATGGAATACAACCGTAAGTAACATCTGTTTGTGTTCTCAATCAGAAGTGAAACTTGATTGCAGAGGATTTCAAACTACAGAAAGCA
TCGATCCTTTGATATTAGCCATTACCGACACTGAATGCTTAGTCAACAATGGACTCCCAATCTTCAACTCAACCCCTATCACCTTCACTTATGCACAAAACCCTCAATTC
AACTTCAAACCAATCTCTTCTCAGATCGCTTGTTCTTAA
Protein sequenceShow/hide protein sequence
MAPSAQLIAALLFVSFLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESIDPLILAITDTECLVNNGLPIFNSTPITFTYAQNPQF
NFKPISSQIACS