; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16020 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16020
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase RHA2B-like
Genome locationCarg_Chr07:2307895..2308380
RNA-Seq ExpressionCarg16020
SyntenyCarg16020
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0016874 - ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036272.1 putative E3 ubiquitin-protein ligase RHA2B [Cucumis melo var. makuwa]7.9e-8293.79Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS+YRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

XP_022132528.1 E3 ubiquitin-protein ligase RHA2B-like [Momordica charantia]2.3e-8191.93Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRP  DKRVI T Q+ KLIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

XP_022963436.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita moschata]1.4e-86100Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

XP_023003552.1 E3 ubiquitin-protein ligase RHA2B-like isoform X1 [Cucurbita maxima]1.1e-8397.52Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTA F TLLILELVILVRTIFGLRPN DKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCR KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

XP_038883588.1 E3 ubiquitin-protein ligase RHA2B-like [Benincasa hispida]1.4e-7894.81Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRV+ TAQFLKLIEEKNPTIRFSNK+TSS ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHG

TrEMBL top hitse value%identityAlignment
A0A0A0KM08 RING-type domain-containing protein8.5e-8293.79Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQF KLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

A0A5A7SYH1 Putative E3 ubiquitin-protein ligase RHA2B3.8e-8293.79Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRPN DKRVI TAQFLKLIE+KNPTIRFSNK+T S ADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNS+YRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

A0A6J1BWI1 E3 ubiquitin-protein ligase RHA2B-like1.1e-8191.93Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLL+LE VIL+RTIFGLRP  DKRVI T Q+ KLIEE+NPTIRFSNK+TSSPADQCAVCLSEFEEG+KVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDD+VAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

A0A6J1HG49 E3 ubiquitin-protein ligase RHA2B-like isoform X16.7e-87100Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

A0A6J1KMW2 E3 ubiquitin-protein ligase RHA2B-like isoform X15.3e-8497.52Show/hide
Query:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
        MGALSEFFSHLHTMTA F TLLILELVILVRTIFGLRPN DKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD
Subjt:  MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKD

Query:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
        CLDNWLKLCFATCPLCR KVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF
Subjt:  CLDNWLKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF

SwissProt top hitse value%identityAlignment
P0CH30 E3 ubiquitin-protein ligase RING19.9e-1140.58Show/hide
Query:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        E  P +  +    +S  +QCAVC+ +FEEG + +++ C H +HKDCL  WL+L   +CP+CR ++  DD
Subjt:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q8LPN7 E3 ubiquitin-protein ligase RING1-like5.3e-1243.94Show/hide
Query:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

Q9XF92 Brassinosteroid-responsive RING protein 14.4e-1145.45Show/hide
Query:  LIEEKNPTIRFSNKITSSPAD---QCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI
        LI E  P I+F  ++T+S  D    CAVCL EFE  +++R L+ C H FH+ CLD W+     TCPLCR+  +PD++
Subjt:  LIEEKNPTIRFSNKITSSPAD---QCAVCLSEFEEGEKVRKLQ-CNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDI

Q9ZT50 E3 ubiquitin-protein ligase RHA2A2.1e-1356.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

Q9ZU51 E3 ubiquitin-protein ligase RHA2B4.3e-1440Show/hide
Query:  LELVILVRTIFG------LRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR
        L L+ L+ T F       L P+    V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCR
Subjt:  LELVILVRTIFG------LRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR

Query:  SKVLP
        S +LP
Subjt:  SKVLP

Arabidopsis top hitse value%identityAlignment
AT1G15100.1 RING-H2 finger A2A1.5e-1456.14Show/hide
Query:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR
        C VCLS+ +EGE+VRKL+C H FHK CL+ WL     TCPLCRS ++ DD V+   R
Subjt:  CAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYHR

AT2G01150.1 RING-H2 finger protein 2B3.1e-1540Show/hide
Query:  LELVILVRTIFG------LRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR
        L L+ L+ T F       L P+    V+ T+    L ++ N    FS + + + A  C VCLS+ + GE+VRKL C H FHK CL+ WL+     CPLCR
Subjt:  LELVILVRTIFG------LRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCR

Query:  SKVLP
        S +LP
Subjt:  SKVLP

AT3G19950.1 RING/U-box superfamily protein3.7e-1343.94Show/hide
Query:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD
        PT++ +  +  S  +QCAVC+ EFE+G  V+++ C H FH+DCL  WL+L   +CP+CR ++  DD
Subjt:  PTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDD

AT3G62690.1 AtL56.4e-1348.53Show/hide
Query:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLP
        EK P   +S K   SP ++C+VCLSEFEE ++ R L +C H FH DC+D W +   ++CPLCR+ V P
Subjt:  EKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKL-QCNHTFHKDCLDNWLKLCFATCPLCRSKVLP

AT5G45290.1 RING/U-box superfamily protein1.1e-1241.43Show/hide
Query:  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH
        I+   K  S    QC +CL E+EE + +R L C+H FHK C+D WLK     CPLCR  +   D  +  H
Subjt:  IRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNWLKLCFATCPLCRSKVLPDDIVAGYH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTCACCCTGTTAATTCTCGAGCTAGTTATTCTCGTTCGCACGATCTTCGGC
TTGAGGCCTAACGTCGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATTACCTCCAGT
CCCGCCGATCAGTGTGCAGTTTGCCTATCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGG
CTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGA
AGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGTAACAGTATATACAGATTTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCTCTCTCCGAGTTTTTCTCCCACCTCCACACAATGACCGCCGTCTTCTTCACCCTGTTAATTCTCGAGCTAGTTATTCTCGTTCGCACGATCTTCGGC
TTGAGGCCTAACGTCGACAAGCGCGTGATTCCGACGGCGCAGTTTTTGAAACTGATCGAGGAGAAGAATCCGACGATTCGATTCTCCAATAAGATTACCTCCAGT
CCCGCCGATCAGTGTGCAGTTTGCCTATCTGAATTCGAGGAAGGGGAGAAGGTACGGAAATTGCAGTGTAACCACACTTTTCACAAGGATTGCCTTGATAATTGG
CTGAAACTCTGTTTCGCTACGTGTCCGCTTTGCCGGAGTAAGGTTTTGCCGGACGATATTGTCGCCGGCTATCACAGGCTGCGGGACCGTGTAGAGTACGACGGA
AGCGACGAGGAGCTCATCTTTTTGTTATCAGCATTACATGGTAACAGTATATACAGATTTTTCTAG
Protein sequenceShow/hide protein sequence
MGALSEFFSHLHTMTAVFFTLLILELVILVRTIFGLRPNVDKRVIPTAQFLKLIEEKNPTIRFSNKITSSPADQCAVCLSEFEEGEKVRKLQCNHTFHKDCLDNW
LKLCFATCPLCRSKVLPDDIVAGYHRLRDRVEYDGSDEELIFLLSALHGNSIYRFF