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Carg16022 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16022
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr07:2298781..2299466
RNA-Seq ExpressionCarg16022
SyntenyCarg16022
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594852.1 hypothetical protein SDJN03_11405, partial [Cucurbita argyrosperma subsp. sororia]3.5e-06100Show/hide
Query:  MYAKCGDPVVFNRMMLKNISTWNDLIS
        MYAKCGDPVVFNRMMLKNISTWNDLIS
Subjt:  MYAKCGDPVVFNRMMLKNISTWNDLIS

KAG6604009.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]3.3e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

KAG7026816.1 hypothetical protein SDJN02_10823, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-50100Show/hide
Query:  MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAKPTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKV
        MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAKPTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKV
Subjt:  MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAKPTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKV

Query:  VHEKT
        VHEKT
Subjt:  VHEKT

XP_022950762.1 pentatricopeptide repeat-containing protein At2g22070 isoform X1 [Cucurbita moschata]3.3e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

XP_023543916.1 pentatricopeptide repeat-containing protein At2g22070 [Cucurbita pepo subsp. pepo]3.3e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

TrEMBL top hitse value%identityAlignment
A0A1S4DWB2 pentatricopeptide repeat-containing protein At2g220703.6e-0452.38Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM +KNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

A0A6J1GFR3 pentatricopeptide repeat-containing protein At2g22070 isoform X11.6e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

A0A6J1GGT1 pentatricopeptide repeat-containing protein At2g22070 isoform X21.6e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

A0A6J1IQ25 pentatricopeptide repeat-containing protein At2g22070 isoform X21.6e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

A0A6J1IT29 pentatricopeptide repeat-containing protein At2g22070 isoform X11.6e-0453.97Show/hide
Query:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG
        MYAKCGDP    VVF+RM LKNISTWN LIS     G                IVSWNS ISG
Subjt:  MYAKCGDP----VVFNRMMLKNISTWNDLISCTCNLG----------------IVSWNSTISG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTG
GAATTCGACGATTTCAGGGGTGGTTCCTGTTCTTGTCAAGACTACTGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGAT
TTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC
mRNA sequenceShow/hide mRNA sequence
ATGTACGCAAAATGTGGAGATCCAGTTGTTTTTAACAGGATGATGCTGAAGAACATTTCAACTTGGAATGATTTGATTTCATGTACATGCAATCTGGGCATAGTTTCTTG
GAATTCGACGATTTCAGGGGTGGTTCCTGTTCTTGTCAAGACTACTGCTATTGTTGTTGTTCCTGCAAAGCCTACCCAAAGGTTCAGCCGGATTGTGGGAAGTGGGCGAT
TTTGTACTATGAGAAGCTCTGCGGCACCCACGATTCTCAATAGTAAGTTGTCGGCATATCGCGCTAAAACTCTTAAGGTCGTGCATGAGAAAACC
Protein sequenceShow/hide protein sequence
MYAKCGDPVVFNRMMLKNISTWNDLISCTCNLGIVSWNSTISGVVPVLVKTTAIVVVPAKPTQRFSRIVGSGRFCTMRSSAAPTILNSKLSAYRAKTLKVVHEKT