CuGenDBv2

Gene ID	Carg16025
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Translation initiation factor IF-2, putative isoform 1
Genome location	Carg_Chr07:2289763..2291567
RNA-Seq Expression	Carg16025
Synteny	Carg16025
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6594850.1 hypothetical protein SDJN03_11403, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-122

99.58

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

KAG7026813.1 hypothetical protein SDJN02_10820, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.7e-123

100

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_022962735.1 uncharacterized protein LOC111463139 [Cucurbita moschata]

6.5e-117

97.05

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKTVK S  SPREK KDEAENELKSEEQ PLV DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWKETESELRANPVDGMDVHASLL RLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_023003233.1 uncharacterized protein LOC111496903 [Cucurbita maxima]

1.5e-116

96.62

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKK VK S  SPREK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGK EV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPG SNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

XP_023518319.1 uncharacterized protein LOC111781838 [Cucurbita pepo subsp. pepo]

2.5e-116

96.62

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKTVK +  SPREK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQ KETESELRANP+DGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SXV4 Translation initiation factor IF-2, putative isoform 1

6.9e-96

81.01

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKTVK SSPS    AKDEA +++K+        DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF+EKLP+LSIS +G+ 
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWK+TE EL  NP DG+D+HASLLHRLS AYP  SAGMRS NGFEFSSKSVKTNPFN E+LQIP+ VLE EPSD+M+LGM DILQTPG+SNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1BYE7 uncharacterized protein LOC111005854

3.9e-99

83.97

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKT K  SPSP      EAENE K EEQAPLV +EDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTP+LQFF+EKLPNLSIS  GE 
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWK+   EL   P DG+D+HASLLHRLSIAYPN SAGM+S+NGFEFSSKSVKTN FNVE+LQIPS VLE EPSDSMMLGM DILQTPGV NQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTP+TRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1HHY4 uncharacterized protein LOC111463139

3.2e-117

97.05

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKKTVK S  SPREK KDEAENELKSEEQ PLV DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWKETESELRANPVDGMDVHASLL RLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1ILD3 uncharacterized protein LOC111478496

1.7e-99

82.28

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKK+VK SSPSP  +AKD + NELKSE+QA LV DEDVERHA AIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFF EKLP+LSIS +GE 
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWK+TE EL  NP DG+D+HASLLHRLS AYPN SAG+RS NGFEFSSKSVKTNPFNVE+LQIP+ VLE EPSD+M+LGM D+LQTPG SNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTP+TRRLPKPGE++VSIHGSPLGVY+E NMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

A0A6J1KR76 uncharacterized protein LOC111496903

7.0e-117

96.62

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        MARRKAKK VK S  SPREK KDEAENELKSEEQAPLV DEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGK EV
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS
        GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPG SNQRLS
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLS

Query:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
        IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH
Subjt:  IGMTPRTRRLPKPGEMLVSIHGSPLGVYKEDNMEAIH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G39630.1 unknown protein

4.8e-49

49.37

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Query:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV
        M +RKAK+ VK +     +      E  ++ EE+     DE+VER  AAIRAIRDVEIE+++T LRLLRSYF +EQL TP+L FFKE LP+LSIS   E 
Subjt:  MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEV

Query:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPN-YSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRL
        GEIE++W++   +  A   +G+D++ S+L RLS+ + + YS    SL G++    +VK N    ++ Q+ +LV +   S++ ML   D  QTPGV+ QRL
Subjt:  GEIEVQWKETESELRANPVDGMDVHASLLHRLSIAYPN-YSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRL

Query:  SIGMTPRTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH
        S GMTP+T RLPK GEM++S+HGSPLGVYKED NM AI+
Subjt:  SIGMTPRTRRLPKPGEMLVSIHGSPLGVYKED-NMEAIH

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAATTCTAGCCCTTCACCTAGGGAAAAAGCAAAGGATGAAGCAGAGAATGAGTTAAAAAGTGAGGAACAGGCACCTTT
GGTGCCCGACGAGGACGTTGAACGTCATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTCAACA
AAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGTGGAAGGAAACT
GAAAGTGAATTACGCGCCAATCCAGTTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTTTAAA
TGGATTTGAATTTTCCAGTAAATCAGTGAAAACCAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATGCTTG
GAATGACAGATATTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATCTATA
CACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACAT

mRNA sequence

Show/hide mRNA sequence

AAGTTTTTGTTCTGTTTTCAATTTATGAAAATCCAGTGACGAAGTGTTTGGATTCGTTTAAGAATGCCGCGAAGTGAGTAGTCCAAAGGATTCAAGAGAGAATTGTTGCT
GAACATGGCAAGGCGAAAGGCGAAGAAAACTGTTAAGAATTCTAGCCCTTCACCTAGGGAAAAAGCAAAGGATGAAGCAGAGAATGAGTTAAAAAGTGAGGAACAGGCAC
CTTTGGTGCCCGACGAGGACGTTGAACGTCATGCTGCTGCAATTCGCGCCATTCGGGATGTGGAGATCGAGCGTTTGATTACTGAATTGCGGTTGCTTCGTTCGTATTTC
AACAAAGAGCAATTGCAAACTCCTCTATTGCAATTTTTCAAGGAGAAACTTCCAAACTTGTCCATTTCTGGAAAAGGCGAAGTAGGAGAAATTGAAGTACAGTGGAAGGA
AACTGAAAGTGAATTACGCGCCAATCCAGTTGATGGAATGGATGTACACGCTTCTCTCTTACATCGTCTGTCCATAGCTTATCCTAACTACTCTGCTGGAATGCGATCTT
TAAATGGATTTGAATTTTCCAGTAAATCAGTGAAAACCAATCCTTTCAATGTTGAGAGCCTGCAAATTCCGAGCTTGGTTTTGGAGGCAGAGCCCTCGGATAGTATGATG
CTTGGAATGACAGATATTCTCCAAACTCCTGGGGTAAGTAACCAAAGATTGTCCATTGGAATGACACCGAGAACCCGAAGGCTTCCAAAGCCCGGTGAGATGCTTGTATC
TATACACGGATCCCCCCTTGGTGTTTATAAGGAAGACAACATGGAAGCAATACAT

Protein sequence

Show/hide protein sequence

MARRKAKKTVKNSSPSPREKAKDEAENELKSEEQAPLVPDEDVERHAAAIRAIRDVEIERLITELRLLRSYFNKEQLQTPLLQFFKEKLPNLSISGKGEVGEIEVQWKET
ESELRANPVDGMDVHASLLHRLSIAYPNYSAGMRSLNGFEFSSKSVKTNPFNVESLQIPSLVLEAEPSDSMMLGMTDILQTPGVSNQRLSIGMTPRTRRLPKPGEMLVSI
HGSPLGVYKEDNMEAIH

Carg16025 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome