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Carg16045 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16045
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAP complex subunit sigma
Genome locationCarg_Chr07:2185554..2186683
RNA-Seq ExpressionCarg16045
SyntenyCarg16045
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006896 - Golgi to vacuole transport (biological process)
GO:0030123 - AP-3 adaptor complex (cellular component)
GO:0030659 - cytoplasmic vesicle membrane (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594830.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia]7.3e-2498.31Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSV
        MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNF+EAESHLRSV
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSV
KAG7026793.1 AP-3 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-31100Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSVHGNGYLLQCQA
        MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSVHGNGYLLQCQA
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSVHGNGYLLQCQA
XP_008452384.1 PREDICTED: AP-3 complex subunit sigma [Cucumis melo]9.2e-1987.04Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNT+GKPRFAKFYDFQP+EKQ ELIRS+YGVLCSRAEN+SNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
XP_023003840.1 AP-3 complex subunit sigma-like [Cucurbita maxima]6.4e-2092.59Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNTQGKPRFAKFYDFQP+EKQLELIRS+YGVLCSRAENVSNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
XP_038893159.1 AP-3 complex subunit sigma [Benincasa hispida]9.2e-1990.74Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNTQGKPRFAKFY+FQPVEKQ ELIRS+YGVLCSRAENVSNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
TrEMBL top hitse value%identityAlignment
A0A1S3BT37 AP complex subunit sigma4.5e-1987.04Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNT+GKPRFAKFYDFQP+EKQ ELIRS+YGVLCSRAEN+SNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
A0A5A7UR76 AP-3 complex subunit sigma4.5e-1987.04Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNT+GKPRFAKFYDFQP+EKQ ELIRS+YGVLCSRAEN+SNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
A0A6J1GFL2 AP complex subunit sigma9.9e-1988.89Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNTQGKPRFAKFYDFQPVEKQ ELIRS++GVLCSRAEN+SNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
A0A6J1IUE1 AP complex subunit sigma4.5e-1990.74Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNTQGKPRFAKFYDFQPVEKQ ELIRS++GVLCSRAENVSNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
A0A6J1KSX1 AP-3 complex subunit sigma-like3.1e-2092.59Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MIR VIVMNTQGKPRFAKFYDFQP+EKQLELIRS+YGVLCSRAENVSNF+EAES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
SwissProt top hitse value%identityAlignment
P59780 AP-3 complex subunit sigma-27.1e-0638.89Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MI+ ++V N  GKPR  +FY   P E Q +++R  + ++  R +N+ NFLE  S
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
Q1JQA3 AP-3 complex subunit sigma-27.1e-0638.89Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MI+ ++V N  GKPR  +FY   P E Q +++R  + ++  R +N+ NFLE  S
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
Q553S2 AP-3 complex subunit sigma3.2e-0641.18Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLE
        MI+ ++++N  GKPR  KFY+    EKQ ++IR ++ ++  R E   NFLE
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLE
Q8BSZ2 AP-3 complex subunit sigma-27.1e-0638.89Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MI+ ++V N  GKPR  +FY   P E Q +++R  + ++  R +N+ NFLE  S
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
Q8VZ37 AP-3 complex subunit sigma6.9e-1774.07Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MI+ V++MNTQGKPR AKFYD+ PVEKQ ELIR ++ VLCSR ENVSNFLE ES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
Arabidopsis top hitse value%identityAlignment
AT3G50860.1 Clathrin adaptor complex small chain family protein4.9e-1874.07Show/hide
Query:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES
        MI+ V++MNTQGKPR AKFYD+ PVEKQ ELIR ++ VLCSR ENVSNFLE ES
Subjt:  MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAES

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACGGGGGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTTGAGAAGCAGCTGGAGCTCATTCGTAGCATCTATGG
AGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCCTGGAAGCTGAGTCCCATCTTCGGTCCGTGCATGGAAACGGATATTTGCTTCAATGTCAGGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATACGGGGGGTGATAGTGATGAACACACAGGGCAAGCCTCGGTTTGCTAAGTTCTACGATTTTCAGCCCGTTGAGAAGCAGCTGGAGCTCATTCGTAGCATCTATGG
AGTACTCTGCAGTCGAGCTGAGAACGTCAGCAATTTCCTGGAAGCTGAGTCCCATCTTCGGTCCGTGCATGGAAACGGATATTTGCTTCAATGTCAGGCTTAA
Protein sequenceShow/hide protein sequence
MIRGVIVMNTQGKPRFAKFYDFQPVEKQLELIRSIYGVLCSRAENVSNFLEAESHLRSVHGNGYLLQCQA