; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16065 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16065
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L7/L12
Genome locationCarg_Chr07:2074550..2077185
RNA-Seq ExpressionCarg16065
SyntenyCarg16065
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000206 - Ribosomal protein L7/L12
IPR008932 - Ribosomal protein L7/L12, oligomerisation
IPR036235 - Ribosomal protein L7/L12, oligomerisation domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594805.1 hypothetical protein SDJN03_11358, partial [Cucurbita argyrosperma subsp. sororia]1.6e-48100Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

KAG7026774.1 hypothetical protein SDJN02_10780, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-60100Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMGILRKIQSFYGTFQVRTAVEDI
        AVMMPGMGILRKIQSFYGTFQVRTAVEDI
Subjt:  AVMMPGMGILRKIQSFYGTFQVRTAVEDI

XP_022963245.1 uncharacterized protein LOC111463515 [Cucurbita moschata]9.6e-4696.3Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLS VRR FA NSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

XP_023003672.1 uncharacterized protein LOC111497194 [Cucurbita maxima]7.8e-4898.15Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYT+ASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

XP_023518906.1 uncharacterized protein LOC111782287 [Cucurbita pepo subsp. pepo]3.0e-4798.15Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

TrEMBL top hitse value%identityAlignment
A0A1S3B1Y6 50S ribosomal protein L7/L126.3e-3576.85Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MR+LR  SSH SR+RR FAQN +S SPST ++NL GLE   SSS +NHRNYT ASPES+PAPSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
         +MMPG G
Subjt:  AVMMPGMG

A0A5A7SN88 50S ribosomal protein L7/L126.3e-3576.85Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MR+LR  SSH SR+RR FAQN +S SPST ++NL GLE   SSS +NHRNYT ASPES+PAPSERV+AIVDEISGLTLLEVADLTEVLREKLDVK+MPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
         +MMPG G
Subjt:  AVMMPGMG

A0A6J1BSG1 uncharacterized protein LOC1110052875.7e-3680.56Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MR+LR +S H SR+ R FAQ    DS ST +LNLLGL  L SSSLLNHRNYT ASPES+PAPSERV+AIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

A0A6J1HHF7 uncharacterized protein LOC1114635154.6e-4696.3Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLS VRR FA NSASDSPSTCNLNLLGLERLTS SLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

A0A6J1KN90 uncharacterized protein LOC1114971943.8e-4898.15Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MRHLRSISSHLSRVRR FAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYT+ASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMG
        AVMMPGMG
Subjt:  AVMMPGMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like1.6e-0644.23Show/hide
Query:  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
        E +  P++RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG G
Subjt:  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG

AT1G70190.2 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like1.6e-0644.23Show/hide
Query:  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG
        E +  P++RV  +VDEIS LTLLE+++L  ++ +K  + ++P +AVM PG G
Subjt:  ESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMG

AT4G36420.1 Ribosomal protein L12 family protein5.6e-1243.12Show/hide
Query:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM
        MR+LR ISSH SRV +         S  T         R +S  L   ++ + +SP ++   SE V+ IV+E+S LTLLE  DLTE+LR+KL++ ++PVM
Subjt:  MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVM

Query:  AVMMPGMGI
        A MMPGM +
Subjt:  AVMMPGMGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTT
GGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCT
CCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGATACTG
CGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACATTTGCGAAGTATTTCCTCTCATTTATCGAGGGTTCGCAGAATTTTCGCTCAAAACTCTGCTTCTGATTCTCCGTCTACTTGCAATTTAAATCTTCTAGGGTT
GGAAAGATTGACATCGTCTTCATTGCTGAATCACCGGAATTACACTGTTGCTTCACCGGAATCAAAACCAGCCCCTTCAGAGAGAGTTACGGCCATTGTGGATGAGATCT
CCGGTCTCACACTACTCGAGGTTGCAGACCTTACGGAGGTTCTTCGAGAAAAGTTGGATGTGAAGGATATGCCGGTAATGGCGGTGATGATGCCGGGGATGGGGATACTG
CGGAAAATACAAAGCTTTTATGGCACTTTTCAAGTCAGAACAGCAGTTGAAGATATATAA
Protein sequenceShow/hide protein sequence
MRHLRSISSHLSRVRRIFAQNSASDSPSTCNLNLLGLERLTSSSLLNHRNYTVASPESKPAPSERVTAIVDEISGLTLLEVADLTEVLREKLDVKDMPVMAVMMPGMGIL
RKIQSFYGTFQVRTAVEDI