CuGenDBv2

Gene ID	Carg16101
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box protein SNE-like
Genome location	Carg_Chr20:3267801..3268265
RNA-Seq Expression	Carg16101
Synteny	Carg16101
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6570941.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-80

97.45

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHV SPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL---GGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL   GGGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL---GGGGDASALSLMFLCNTVNV

XP_022943904.1 F-box protein SNE-like [Cucurbita moschata]

2.0e-82

100

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

XP_022985800.1 F-box protein SNE-like [Cucurbita maxima]

3.2e-80

98.7

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL GGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

XP_023512130.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo]

8.4e-81

98.08

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL--GGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL  GGGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL--GGGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

9.6e-77

94.16

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHVTSPLP+SVKSVV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+  GGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

1.5e-75

92.21

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+  GG+ASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

3.7e-74

90.91

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+  GGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

9.7e-75

91.56

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDL+RRVWTQ+EVQLSLSLFCVDYYERLTG+GR+  GGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

A0A6J1FVJ9 F-box protein SNE-like

9.6e-83

100

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

A0A6J1JCA9 F-box protein SNE-like

1.5e-80

98.7

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Query:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
        MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY
Subjt:  MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGY

Query:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
        SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRL GGGDASALSLMFLCNTVNV
Subjt:  SDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

8.0e-10

33.33

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Query:  DILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSP--LPASVKSVVVALGGYKRLYMVSIRPVLSR-LGYSDLMRRVWT-----QNEVQ
        D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       +++VV++LGG++RL+ V IRP+  R  G      R        +++VQ
Subjt:  DILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSP--LPASVKSVVVALGGYKRLYMVSIRPVLSR-LGYSDLMRRVWT-----QNEVQ

Query:  LSLSLFCVDYYERL
        LSLSLF + +++ +
Subjt:  LSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

6.1e-34

50.32

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V+     S++SVV ALGGY+ LY + IRPVL+R  
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG

Query:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
           L + +WT++++QLSLSL+CV YYERL     L   GDA   SL+FL   VNV
Subjt:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

1.5e-11

35.4

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Query:  NLD--ILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+       ++SVV+ALGG++RL+ + + P LS+       R  + ++E++L+
Subjt:  NLD--ILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS

Query:  LSLFCVDYYERLT
        LSL  + YYE+++
Subjt:  LSLFCVDYYERLT

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

1.0e-12

35.4

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Query:  NLD--ILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS
        NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH T+       ++SVV+ALGG++RL+ + + P LS+       R  + ++E++L+
Subjt:  NLD--ILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTS--PLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLS

Query:  LSLFCVDYYERLT
        LSL  + YYE+++
Subjt:  LSLFCVDYYERLT

AT5G48170.1 F-box family protein

4.3e-35

50.32

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Query:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG
        + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE++CFR V+     S++SVV ALGGY+ LY + IRPVL+R  
Subjt:  IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLG

Query:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV
           L + +WT++++QLSLSL+CV YYERL     L   GDA   SL+FL   VNV
Subjt:  YSDLMRRVWTQNEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTTATCGAAATCCTCAAGCGGCTGGACGGACCATCGCT
CGGCATCGCGACCTGCGTCTGTCGGCTCTGGTGCACCATCGCTCGAAGCGAATCGGTTTGGGAACAGGTCTGCTTCCGGCACGTAACATCGCCGCTTCCAGCGTCTGTGA
AATCGGTGGTGGTCGCCTTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCAGTGCTGAGTCGACTCGGCTACTCAGACCTAATGAGGCGAGTTTGGACTCAG
AACGAAGTTCAACTTTCACTGTCTCTGTTCTGCGTGGATTACTACGAGCGGCTCACCGGAAATGGAAGACTCGGCGGCGGCGGCGATGCGTCCGCATTGTCACTCATGTT
CCTCTGCAACACCGTCAACGTCTGA

mRNA sequence

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Protein sequence

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MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQVCFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQ
NEVQLSLSLFCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV

Carg16101 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome