CuGenDBv2

Gene ID	Carg16105
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nuclear transcription factor Y subunit B-3
Genome location	Carg_Chr20:3289590..3290105
RNA-Seq Expression	Carg16105
Synteny	Carg16105
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6570945.1 hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sororia]

6.2e-85

96.57

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDD----DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTG+YVSHKSDDDD    DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDD----DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

KAG7010784.1 hypothetical protein SDJN02_27580, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-88

100

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTGHYVSHKSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_022943897.1 uncharacterized protein LOC111448485 [Cucurbita moschata]

2.1e-85

96.57

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDD----DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTGHYVSHKSDDDD    DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDD----DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_022985724.1 uncharacterized protein LOC111483694 [Cucurbita maxima]

2.4e-84

96.53

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLH QQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDD--DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTGHYV+HKSDDDD  DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDD--DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_023513390.1 uncharacterized protein LOC111777891 [Cucurbita pepo subsp. pepo]

7.4e-78

91.95

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQ+EEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTA N+YRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDD---DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PT HYVSHKSDDDD   DDMSF      EFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDD---DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KCP7 Uncharacterized protein

8.5e-56

72.47

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Query:  MLYFSISKTNPFPLHKSLHQQQQEE-QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTITEESEVEWPFFDR--STANNLYRSDDGSISDEESLI
        MLYFSISK N  P+ K + ++++EE QK+LTF  SDH   SSASAPT+ DLLSESECADDNFT TEESEVEWP+FD   +   N +RSDDGSISDEESLI
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEE-QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTITEESEVEWPFFDR--STANNLYRSDDGSISDEESLI

Query:  EIALPTGHYVSHKSDD---DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EIALPTGHYVS K DD   D+DD+SF +QKL++FQ    +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EIALPTGHYVSHKSDD---DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5D3CJH9 Uncharacterized protein

1.2e-54

71.98

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Query:  MLYFSISKTNPFPLHKSLHQQQQEE---QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTITEESEVEWPFFDRS--TANNLYRSDDGSISDEES
        MLYFSISK +  P+ K + +Q++EE   QKELTF  SDH   SSASAPT  DLLSESECADDNFT TEESEVEWP+FD     A + +RSDDGSISDEES
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEE---QKELTFLSSDHRNFSSASAPTV-DLLSESECADDNFTITEESEVEWPFFDRS--TANNLYRSDDGSISDEES

Query:  LIEIALPTGHYVSHKSDD-----DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        LIEIALPTGHYVS K DD     D+DD  F +QKLS+FQ    KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  LIEIALPTGHYVSHKSDD-----DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC111011203

1.1e-55

71.98

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Query:  MLYFSISKTN------PFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEES
        MLYF+ISK N      P P+ K + ++++E + E++F S   + FSSASAPT DLLSESECADDNFT TEESEVEWPF DR+TA+N  RS DGSISDEES
Subjt:  MLYFSISKTN------PFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEES

Query:  LIEIALPTGHYVSHKSDD-----DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        LIEIALPTGHYVSHK DD     D+DDMSF  QKLS+FQK   +KNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  LIEIALPTGHYVSHKSDD-----DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1FUA8 uncharacterized protein LOC111448485

1.0e-85

96.57

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLHQQQQ+EQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDD----DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTGHYVSHKSDDDD    DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDD----DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1JE34 uncharacterized protein LOC111483694

1.1e-84

96.53

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Query:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL
        MLYFSISKTNPFPLHKSLH QQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFT TEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEIAL
Subjt:  MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIAL

Query:  PTGHYVSHKSDDDD--DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        PTGHYV+HKSDDDD  DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  PTGHYVSHKSDDDD--DDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G04480.1 unknown protein

2.2e-16

36.2

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Query:  FPL---HKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSH
        FP+   H S+   +Q++ +E  +++            T D+  +SE   +N   T E +                 DDG+I D+ESLIE++LP+GHY+ H
Subjt:  FPL---HKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSH

Query:  KSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
          + + + + +   K+ +F+       L +LL EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  KSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein

8.8e-13

42.57

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Query:  STANNLYRS---DDGSISDEESLIEIALPTGHYVSHKSDD--DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIE
        +T N++ ++   DDG+I DEESLIE++LP+GHY+ H         D    +  + +F+       L++L AE     E++NLIEIDIS+GSIK SRF+I+
Subjt:  STANNLYRS---DDGSISDEESLIEIALPTGHYVSHKSDD--DDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIE

Query:  A
        A
Subjt:  A

Sequences

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CDS sequence

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ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCG
GAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTG
ACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCC
GATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAA
CGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

mRNA sequence

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Protein sequence

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MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKS
DDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

Carg16105 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome