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Carg16108 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16108
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRPM1-interacting protein 4-like
Genome locationCarg_Chr20:3301720..3304819
RNA-Seq ExpressionCarg16108
SyntenyCarg16108
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8646808.1 hypothetical protein Csa_005404 [Cucumis sativus]2.3e-2590.91Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSS
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKD+  +KNGSVLGK QPVSS
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSS

KAG6570949.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia]8.4e-28100Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

KAG7010787.1 hypothetical protein SDJN02_27583, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-109100Show/hide
Query:  LEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGDVSDIRLGNSRLFRDCLAIALALHIMRLGGCKE
        LEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGDVSDIRLGNSRLFRDCLAIALALHIMRLGGCKE
Subjt:  LEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGDVSDIRLGNSRLFRDCLAIALALHIMRLGGCKE

Query:  KGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSSLQPNVLESLRLVLKNGFAACKLQNREAFRIDERSS
        KGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSSLQPNVLESLRLVLKNGFAACKLQNREAFRIDERSS
Subjt:  KGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSSLQPNVLESLRLVLKNGFAACKLQNREAFRIDERSS

Query:  AESTH
        AESTH
Subjt:  AESTH

XP_022943908.1 RPM1-interacting protein 4-like [Cucurbita moschata]8.4e-28100Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

XP_038902743.1 protein NOI4 [Benincasa hispida]2.1e-2696.83Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GGMPDSPAKDDPTYKNGSVLGK QP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

TrEMBL top hitse value%identityAlignment
A0A6J1CFY0 RPM1-interacting protein 41.1e-2593.55Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQ
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDPTYK+G+VLGKPQ
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQ

A0A6J1FXH4 RPM1-interacting protein 4-like4.1e-28100Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

A0A6J1G769 uncharacterized protein LOC111451376 isoform X24.2e-2589.06Show/hide
Query:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDP+YK+G+VLGK QP
Subjt:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

A0A6J1I4X6 uncharacterized protein LOC111469905 isoform X24.2e-2589.06Show/hide
Query:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDP+YK+G+VLGK QP
Subjt:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

A0A6J1J928 RPM1-interacting protein 4-like4.1e-28100Show/hide
Query:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
        EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP
Subjt:  EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQP

SwissProt top hitse value%identityAlignment
O22633 Protein NOI43.8e-1569.49Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQP
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKK GG P SP K    +    G    KPQP
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQP

Q8GYN5 RPM1-interacting protein 44.6e-0544.68Show/hide
Query:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKN
        +PKFG+WD N+P+SA+G+T IFNK R E+ +G      ++  PT+++
Subjt:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKN

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein3.1e-2082.14Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY-KNGSVLGKP
        PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GG  DSP KD+P Y KNG VL KP
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY-KNGSVLGKP

AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein9.9e-1158.18Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGG--------MPDSPAKDDPTYK
        PLPKFGEWDVNDPASAEGFTVIF KAR++KK             ++ ++D+PT K
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGG--------MPDSPAKDDPTYK

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein5.4e-1766.67Show/hide
Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQPVSSL
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKK GG P SP K    +    G    KPQPV  +
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQPVSSL

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein3.2e-1762.86Show/hide
Query:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQPVSSL
        ++KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKK GG P SP K    +    G    KPQPV  +
Subjt:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQPVSSL

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein2.1e-1665.15Show/hide
Query:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQP
        ++KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKK GG P SP K    +    G    KPQP
Subjt:  KEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTY--KNGSVLGKPQP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCC
ACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGATGTTTCTGATATTCGAT
TGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTGGCTGCAAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTC
GGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGA
TGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAGTTCTTTGCAGCCAAATGTTCTTGAATCTCTTCGTTTAGTTTTAAAAAATGGTTTTGCTG
CTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGA
mRNA sequenceShow/hide mRNA sequence
CTGGAAGTAGCAGACACCGTTAAACGTCCTTCGAAGCTGCGTAGACTAAGGGCCCCGCTTTCCACTTCTATAATATCCCATTACCCAACTCCTTCTCTTGTCCTACTCCC
ACGCCCCCTCTTCTCTCTCAATCAACCATACACTCCTTTACCTTCAAAATCCATCATCGCCACCATCTTCTCGTCGAACCCCACTCATGGCGATGTTTCTGATATTCGAT
TGGGCAATTCTCGATTGTTTCGAGATTGTCTCGCCATTGCGTTGGCTCTTCATATCATGAGGTTGGGTGGCTGCAAGGAAAAAGGCAGTAGCAGTCCGTTGCCGAAATTC
GGCGAATGGGATGTGAACGACCCTGCATCTGCTGAGGGATTCACAGTAATCTTCAATAAAGCCAGGAATGAGAAAAAGGCTGGTGGCATGCCTGACTCTCCAGCAAAGGA
TGACCCCACATACAAGAATGGTTCTGTTCTTGGAAAGCCTCAACCTGTAAGTTCTTTGCAGCCAAATGTTCTTGAATCTCTTCGTTTAGTTTTAAAAAATGGTTTTGCTG
CTTGCAAGCTGCAGAATCGTGAGGCTTTTCGGATCGATGAACGGAGTTCAGCAGAATCAACACACTGAATTTTATCTCTTGAAGATTGAAGCTGCTGCATTTAGAATGTG
TTTATGGATAATGCTGAACTCCTTGGGGTTTGGGGATGAAGATGATTAGTCATCATTGTGTTGTTATGTTGTTCCTTCTGCATAAATGGCAACTATTAGAGATTGTTGCT
TATCATCTTCCCTCCTCCCTGCTGCCCTCTTGTTGTGAAATGATGCTCTGATCCTCTTTGTTCACACTTTTTCTTGCCTTAATGATTTCAAATGTCTCTCTTTCTCTGTG
ATCTTAAATTTTATGCAA
Protein sequenceShow/hide protein sequence
LEVADTVKRPSKLRRLRAPLSTSIISHYPTPSLVLLPRPLFSLNQPYTPLPSKSIIATIFSSNPTHGDVSDIRLGNSRLFRDCLAIALALHIMRLGGCKEKGSSSPLPKF
GEWDVNDPASAEGFTVIFNKARNEKKAGGMPDSPAKDDPTYKNGSVLGKPQPVSSLQPNVLESLRLVLKNGFAACKLQNREAFRIDERSSAESTH