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Carg16111 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16111
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-H2 finger protein ATL18-like
Genome locationCarg_Chr20:3314203..3314652
RNA-Seq ExpressionCarg16111
SyntenyCarg16111
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604984.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5579.14Show/hide
Query:  LAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERN
        LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  EEE+CSICL EFAR DSVC LPDC+HVFHFDCIEKW ERN
Subjt:  LAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERN

Query:  RFTCPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        RFTCPLCRC  FFNI   HE+KL+FVVPDNPS LYYFLQ
Subjt:  RFTCPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ

KAG7010790.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-80100Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
Subjt:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ

XP_022944066.1 RING-H2 finger protein ATL18-like [Cucurbita moschata]2.0e-7997.99Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG+ASVFRL SLPEMDSSRGGTLLVRRYEELQRSDDR EEEEMCSICLTEFAREDSVCKLPDCAHVF
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
Subjt:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ

XP_022947864.1 E3 ubiquitin-protein ligase ATL41-like, partial [Cucurbita moschata]2.0e-5576.16Show/hide
Query:  LGLIFLNSR-IGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        LGL   N R   LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  EEE+CSICL EFAR DSVC LPDC+HVF
Subjt:  LGLIFLNSR-IGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        HFDCIEKW ERNRFTCPLCRC  FFNI   HE+KL+FVVPDNPS LYYFLQ
Subjt:  HFDCIEKWHERNRFTCPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ

XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]4.0e-8098.66Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG+ASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        HFDCIEKWHERNRFTCPLCRCFFNIEKHHE+KLRFVVPDNPSSLYYFLQ
Subjt:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ

TrEMBL top hitse value%identityAlignment
A0A5A7TXY0 RING-H2 finger protein ATL18-like7.5e-4059.21Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-IASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAR-EDSVCKLPDCAH
        MLGL +L S +   I+FF+TF+WIPLFR+K+AILG +A+VF L S P+  +     ++VR Y+E    D     EE+CSICLTEF R EDSVCKLP+C H
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG-IASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAR-EDSVCKLPDCAH

Query:  VFHFDCIEKWHERNRFTCPLCRCFFNIEKHH-EKKLRFVVPDNPSSLYYFLQ
        +FHF+CI++W +RNRFTCPLCRCFF  + H  + K RF+VPDNPSSLYYFLQ
Subjt:  VFHFDCIEKWHERNRFTCPLCRCFFNIEKHH-EKKLRFVVPDNPSSLYYFLQ

A0A6J1CHK3 RING-H2 finger protein ATL645.7e-4065.22Show/hide
Query:  LAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEE-MCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHER
        L +IF    V IPLF +K+AIL +A+VFR +S P            RRYEEL+R +D T E+E MCSICLTEFAR+DSV +LPDCAHVFH +CIEKW ER
Subjt:  LAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEE-MCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHER

Query:  NRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        N FTCPLCRCFFNIE   E KLRFV+PDNPS LYYFLQ
Subjt:  NRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ

A0A6J1FTE6 RING-H2 finger protein ATL18-like9.6e-8097.99Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILG+ASVFRL SLPEMDSSRGGTLLVRRYEELQRSDDR EEEEMCSICLTEFAREDSVCKLPDCAHVF
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ
Subjt:  HFDCIEKWHERNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ

A0A6J1G855 E3 ubiquitin-protein ligase ATL41-like9.7e-5676.16Show/hide
Query:  LGLIFLNSR-IGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        LGL   N R   LAI FFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQRSDDR  EEE+CSICL EFAR DSVC LPDC+HVF
Subjt:  LGLIFLNSR-IGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        HFDCIEKW ERNRFTCPLCRC  FFNI   HE+KL+FVVPDNPS LYYFLQ
Subjt:  HFDCIEKWHERNRFTCPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ

A0A6J1I5X8 RING-H2 finger protein ATL181.5e-5176.47Show/hide
Query:  IFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFT
        IFFNT+VWIPL R+K+AI+G  SVFRLA +PE D S GGTLLVRRYEELQR  DR  EEE+CSICL EFAR DSVC L DC+HVFHF CIEKW ERNRFT
Subjt:  IFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFT

Query:  CPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ
        CPLCRC  FFNI   HE+KL+FVVPDNPS LYYFLQ
Subjt:  CPLCRC--FFNIEKHHEKKLRFVVPDNPSSLYYFLQ

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL643.5e-1059.18Show/hide
Query:  EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
        EE+E CS+CL+EF  ED    LP C H FH DCI+ W  R+R TCPLCR
Subjt:  EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR

P93823 RING-H2 finger protein ATL11.1e-0840.68Show/hide
Query:  DDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRCFFNIE
        +D+++  + CS+CL EF  ++ +  +P+C HVFH DCI+ W + N   CPLCR   + E
Subjt:  DDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCRCFFNIE

Q9LZJ6 RING-H2 finger protein ATL56.6e-0956.52Show/hide
Query:  EMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
        E CS+CL+EF  +D    LP C HVFH DCI+ W  R+R +CPLCR
Subjt:  EMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR

Q9SUS5 E3 ubiquitin-protein ligase RHA1B1.7e-0938.03Show/hide
Query:  SRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKW-HERNRFTCPLCR
        S   TL       ++ SD  T+ E+ C++CL++F  +D + +LP C HVFH  C+++W  + N+ TCP+CR
Subjt:  SRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKW-HERNRFTCPLCR

Q9SZL4 RING-H2 finger protein ATL182.2e-1238.52Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        M+ ++F  S +  A I F T V IPL R+K          +     +     G  L+      +   D   EEE  C ICL EF  ED+V  LP CAH+F
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRCF
        H +CIE W  R   TCPLCR F
Subjt:  HFDCIEKWHERNRFTCPLCRCF

Arabidopsis top hitse value%identityAlignment
AT1G67856.1 RING/U-box superfamily protein3.6e-1040.54Show/hide
Query:  DSSRGGTLLVRRYEEL-QRSDDRTEEEEM-CSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
        DS R   + +  +E L +    R E E M C +CL  F  E+ V +L  C H FH  C++KW   N  TCPLCR
Subjt:  DSSRGGTLLVRRYEEL-QRSDDRTEEEEM-CSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR

AT2G47560.1 RING/U-box superfamily protein2.5e-1159.18Show/hide
Query:  EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
        EE+E CS+CL+EF  ED    LP C H FH DCI+ W  R+R TCPLCR
Subjt:  EEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR

AT3G62690.1 AtL54.7e-1056.52Show/hide
Query:  EMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR
        E CS+CL+EF  +D    LP C HVFH DCI+ W  R+R +CPLCR
Subjt:  EMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHERNRFTCPLCR

AT4G11360.1 RING-H2 finger A1B1.2e-1038.03Show/hide
Query:  SRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKW-HERNRFTCPLCR
        S   TL       ++ SD  T+ E+ C++CL++F  +D + +LP C HVFH  C+++W  + N+ TCP+CR
Subjt:  SRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKW-HERNRFTCPLCR

AT4G38140.1 RING/U-box superfamily protein1.6e-1338.52Show/hide
Query:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF
        M+ ++F  S +  A I F T V IPL R+K          +     +     G  L+      +   D   EEE  C ICL EF  ED+V  LP CAH+F
Subjt:  MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVF

Query:  HFDCIEKWHERNRFTCPLCRCF
        H +CIE W  R   TCPLCR F
Subjt:  HFDCIEKWHERNRFTCPLCRCF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAGGTTTAATTTTTCTCAATTCGCGTATTGGACTCGCCATCATTTTCTTCAACACTTTCGTATGGATCCCGTTATTTCGTGTCAAGGAAGCGATTCTCGGTATCGC
TAGTGTCTTCCGCCTCGCTTCCTTGCCAGAAATGGACAGCTCCCGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAACGGAAGAGG
AGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCAAATTGCCGGATTGTGCGCACGTTTTTCACTTCGATTGCATCGAGAAATGGCATGAG
AGGAATCGCTTCACTTGTCCTCTCTGTAGATGCTTCTTCAACATCGAGAAACACCATGAGAAGAAGCTCCGCTTCGTTGTTCCAGATAATCCTTCCTCCCTTTATTATTT
CTTGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAGGTTTAATTTTTCTCAATTCGCGTATTGGACTCGCCATCATTTTCTTCAACACTTTCGTATGGATCCCGTTATTTCGTGTCAAGGAAGCGATTCTCGGTATCGC
TAGTGTCTTCCGCCTCGCTTCCTTGCCAGAAATGGACAGCTCCCGCGGCGGAACTCTGCTGGTGAGAAGATACGAAGAGTTGCAGAGGAGCGATGATCGAACGGAAGAGG
AGGAGATGTGCTCCATCTGTTTGACGGAATTCGCGAGAGAAGATTCCGTGTGCAAATTGCCGGATTGTGCGCACGTTTTTCACTTCGATTGCATCGAGAAATGGCATGAG
AGGAATCGCTTCACTTGTCCTCTCTGTAGATGCTTCTTCAACATCGAGAAACACCATGAGAAGAAGCTCCGCTTCGTTGTTCCAGATAATCCTTCCTCCCTTTATTATTT
CTTGCAGTGA
Protein sequenceShow/hide protein sequence
MLGLIFLNSRIGLAIIFFNTFVWIPLFRVKEAILGIASVFRLASLPEMDSSRGGTLLVRRYEELQRSDDRTEEEEMCSICLTEFAREDSVCKLPDCAHVFHFDCIEKWHE
RNRFTCPLCRCFFNIEKHHEKKLRFVVPDNPSSLYYFLQ