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Carg16154 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16154
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionChromatin-remodeling ATPase INO80
Genome locationCarg_Chr20:3556667..3556975
RNA-Seq ExpressionCarg16154
SyntenyCarg16154
Gene Ontology termsGO:0009987 - cellular process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010833.1 hypothetical protein SDJN02_27629, partial [Cucurbita argyrosperma subsp. argyrosperma]9.1e-36100Show/hide
Query:  MGDVLTRSLSPKGGVDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGGGL
        MGDVLTRSLSPKGGVDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGGGL
Subjt:  MGDVLTRSLSPKGGVDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGGGL

KAG7031312.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-0447.83Show/hide
Query:  PKGGVDMRRC---ASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGGG
        P G ++ + C   +S      R  +  G DMR+CASKD GPRR    GSHI  RRERV  + LG EGGG
Subjt:  PKGGVDMRRC---ASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGGG

XP_022925142.1 DNA helicase INO80-like isoform X1 [Cucurbita moschata]3.2e-0455.74Show/hide
Query:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG
        +D  RCASK+A P     RR VD R CASKD G RR     SHI  RRERVPA+ L  E G
Subjt:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG

XP_022925143.1 DNA helicase INO80-like isoform X2 [Cucurbita moschata]3.2e-0455.74Show/hide
Query:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG
        +D  RCASK+A P     RR VD R CASKD G RR     SHI  RRERVPA+ L  E G
Subjt:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG

XP_022925146.1 DNA helicase INO80-like isoform X5 [Cucurbita moschata]3.2e-0455.74Show/hide
Query:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG
        +D  RCASK+A P     RR VD R CASKD G RR     SHI  RRERVPA+ L  E G
Subjt:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG

TrEMBL top hitse value%identityAlignment
A0A6J1EAZ7 Chromatin-remodeling ATPase INO801.5e-0455.74Show/hide
Query:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG
        +D  RCASK+A P     RR VD R CASKD G RR     SHI  RRERVPA+ L  E G
Subjt:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG

A0A6J1EBE0 Chromatin-remodeling ATPase INO801.5e-0455.74Show/hide
Query:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG
        +D  RCASK+A P     RR VD R CASKD G RR     SHI  RRERVPA+ L  E G
Subjt:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG

A0A6J1EEE8 Chromatin-remodeling ATPase INO801.5e-0455.74Show/hide
Query:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG
        +D  RCASK+A P     RR VD R CASKD G RR     SHI  RRERVPA+ L  E G
Subjt:  VDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGATGTACTAACGAGAAGTTTGAGCCCCAAAGGGGGTGTGGACATGAGACGGTGTGCCAGCAAGGACGCTGGGCCCCAAAGAGCTGAGGACCGAAGGGGGGTGGA
CATGAGACAGTGTGCTAGCAAAGACACTGGGCCCCGAAGGGAATGGATTGGGGGGTCCCACATCGGTCGAAGAAGGGAACGAGTGCCCGCGAAAATGCTGGGCCTCGAAG
GGGGTGGATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGATGTACTAACGAGAAGTTTGAGCCCCAAAGGGGGTGTGGACATGAGACGGTGTGCCAGCAAGGACGCTGGGCCCCAAAGAGCTGAGGACCGAAGGGGGGTGGA
CATGAGACAGTGTGCTAGCAAAGACACTGGGCCCCGAAGGGAATGGATTGGGGGGTCCCACATCGGTCGAAGAAGGGAACGAGTGCCCGCGAAAATGCTGGGCCTCGAAG
GGGGTGGATTGTGA
Protein sequenceShow/hide protein sequence
MGDVLTRSLSPKGGVDMRRCASKDAGPQRAEDRRGVDMRQCASKDTGPRREWIGGSHIGRRRERVPAKMLGLEGGGL