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Carg16243 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16243
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionVQ domain-containing protein
Genome locationCarg_Chr06:2723679..2724011
RNA-Seq ExpressionCarg16243
SyntenyCarg16243
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR008889 - VQ
IPR039607 - VQ motif-containing protein 8/17/18/20/21/25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043778.1 protein MKS1-like [Cucumis melo var. makuwa]8.7e-3276.15Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAVVA+S SA+GMI DH GE  
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC

Query:  VSACNYIPS
         SACN IPS
Subjt:  VSACNYIPS

KAG6596645.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.4e-53100Show/hide
Query:  MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEV
        MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEV
Subjt:  MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEV

Query:  CVSACNYIPS
        CVSACNYIPS
Subjt:  CVSACNYIPS

KGN59247.1 hypothetical protein Csa_002000 [Cucumis sativus]1.7e-2770.8Show/hide
Query:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHP
        ++AARN    +LRGPRPPPLTVNK SST I KKST  N  PI N   RR P+I+YLRSPK+IHVRPEEFKSFVQRLTGN SSVAVVA+S SATGMI D  
Subjt:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHP

Query:  GEVCVSACNYIPS
         E  VS CN IPS
Subjt:  GEVCVSACNYIPS

OMO68664.1 VQ motif-containing protein [Corchorus olitorius]7.0e-1360.81Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA
        L+GPRP PL V+ +S+KI KKS+TT+ +   N R     DPV++YLRSPKIIHVRPEEF S VQRLTG  S+ A
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRR-----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVA

XP_008443599.1 PREDICTED: protein MKS1-like [Cucumis melo]8.7e-3276.15Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAVVA+S SA+GMI DH GE  
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC

Query:  VSACNYIPS
         SACN IPS
Subjt:  VSACNYIPS

TrEMBL top hitse value%identityAlignment
A0A0A0LEW5 VQ domain-containing protein8.3e-2870.8Show/hide
Query:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHP
        ++AARN    +LRGPRPPPLTVNK SST I KKST  N  PI N   RR P+I+YLRSPK+IHVRPEEFKSFVQRLTGN SSVAVVA+S SATGMI D  
Subjt:  NSAARNQLPLRLRGPRPPPLTVNK-SSTKIFKKSTTTNLRPIPN---RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHP

Query:  GEVCVSACNYIPS
         E  VS CN IPS
Subjt:  GEVCVSACNYIPS

A0A1R3JJT0 VQ motif-containing protein3.4e-1358.97Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKK-STTTNLRPIPNRR----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAA
        L+GPRP PL V+ +S+KI KK STT++L+   N R    DPV++YLRSPKIIHVRPEEF S VQRLTG  S+ A  ++
Subjt:  LRGPRPPPLTVNKSSTKIFKK-STTTNLRPIPNRR----DPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAA

A0A1S3B975 protein MKS1-like4.2e-3276.15Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAVVA+S SA+GMI DH GE  
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC

Query:  VSACNYIPS
         SACN IPS
Subjt:  VSACNYIPS

A0A2N9GB07 VQ domain-containing protein1.2e-1356.67Show/hide
Query:  MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN--RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFS
        M+S  R +  L+L+GPRP PLTVNKSSTKI K       +P+PN  R  PVI+YL+SPK+IHVRPEEF   VQ+LTGN +   V A S S
Subjt:  MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN--RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFS

A0A5D3DP92 Protein MKS1-like4.2e-3276.15Show/hide
Query:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC
        +AARNQ   +LRGPRPPPLTVNKSST IFKKST   N R   NRR P+I+YLRSPKIIHVRPEEFKSFVQRLTGN SSVAVVA+S SA+GMI DH GE  
Subjt:  SAARNQLPLRLRGPRPPPLTVNKSSTKIFKKST-TTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVC

Query:  VSACNYIPS
         SACN IPS
Subjt:  VSACNYIPS

SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B4.3e-0535.56Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSAT
        GP+P PL V   S KI KK       P P                  PV +Y  +P+IIH  P  F + VQRLTG  S+    ++S S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSAT

Q8LGD5 Protein MKS12.4e-0844.87Show/hide
Query:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV
        L++ GPRP PL+V+K S KI  K    +  P PNR        R+PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV

Q9CA36 VQ motif-containing protein 8, chloroplastic8.6e-0645.31Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        + G RP  L +   S  I KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Q9LS54 VQ motif-containing protein 201.3e-0643.33Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding3.0e-0635.56Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSAT
        GP+P PL V   S KI KK       P P                  PV +Y  +P+IIH  P  F + VQRLTG  S+    ++S S+T
Subjt:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSAT

AT1G21326.1 VQ motif-containing protein4.7e-0737.78Show/hide
Query:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSAT
        GPRP PL V   S KI KK       P P                  PVI+Y  SP+IIH  P  F + VQRLTG  +S +  ++S+S++
Subjt:  GPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD--------------PVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSAT

AT1G68450.1 VQ motif-containing protein6.1e-0745.31Show/hide
Query:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        + G RP  L +   S  I KK+++   +P P+ R  PVI+Y  SPK+IH R E+F + VQRLTG
Subjt:  LRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPN-RRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18360.1 VQ motif-containing protein9.4e-0843.33Show/hide
Query:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG
        P PP L VNK S  I K  + ++       R PVI+Y  +P+IIH  P++F + VQ+LTG
Subjt:  PRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTG

AT3G18690.1 MAP kinase substrate 11.7e-0944.87Show/hide
Query:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV
        L++ GPRP PL+V+K S KI  K    +  P PNR        R+PV++Y  SPK++H    EF + VQRLTG  S V
Subjt:  LRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNR--------RDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGAC
GAATCTGCGTCCGATTCCGAACCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTTA
CTGGAAACGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGGCGAGGTATGTGTATCGGCCTGCAATTACATTCCGTCG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGAACTCCGCCGCCAGGAATCAATTGCCATTGCGACTTCGAGGTCCAAGGCCACCGCCATTGACGGTGAACAAATCCTCCACGAAGATCTTCAAGAAATCGACAACGAC
GAATCTGCGTCCGATTCCGAACCGACGCGATCCTGTAATCGTTTACCTTAGATCGCCGAAGATTATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGTCTTA
CTGGAAACGGATCGTCCGTCGCCGTCGTTGCGGCGTCCTTTTCTGCTACTGGAATGATTGCCGATCATCCTGGCGAGGTATGTGTATCGGCCTGCAATTACATTCCGTCG
TAG
Protein sequenceShow/hide protein sequence
MNSAARNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRDPVIVYLRSPKIIHVRPEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVCVSACNYIPS