; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg16263 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16263
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptioncold shock domain-containing protein 3-like
Genome locationCarg_Chr06:2874296..2875081
RNA-Seq ExpressionCarg16263
SyntenyCarg16263
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596667.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. sororia]3.9e-13999.62Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
        GGGGGGGCFNCGEYGHLARDCQNESRNS GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

KAG7028203.1 Cold shock protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-140100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
        GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

XP_022948847.1 cold shock protein 1-like [Cucurbita moschata]6.3e-13798.85Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
         GGGGGGCFNCGEYGHLARDCQNESRNS GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

XP_023005696.1 cold shock domain-containing protein 3-like [Cucurbita maxima]2.0e-13597.72Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGN-SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDC RGN  GGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGN-SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGGCFNCGEYGHLARDCQNESRN-SGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
         GGGGGGGCFNCGEYGHLARDCQNESRN SGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  SGGGGGGGCFNCGEYGHLARDCQNESRN-SGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

XP_023540854.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]4.8e-13798.48Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS

Query:  --GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
          GGGGGGGCFNCGEYGHLARDCQNESRNS GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  --GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

TrEMBL top hitse value%identityAlignment
A0A5D3CJR2 Cold shock domain-containing protein 31.3e-12791.51Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGG-------GGRGGRG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGG       GGRGG G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGG-------GGRGGRG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNR-GGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGGCYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDC R SNR GGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGG+GGG CYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNR-GGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGGCYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNS--GGGRFGGGGGGGANTCFNCGKSGHFARECPDA
        NRGGAGGGSGGGGGGGCFNCGEYGH+ARDCQNESR S  GGGRFGGGGGGG+NTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNS--GGGRFGGGGGGGANTCFNCGKSGHFARECPDA

A0A6J1E5N5 cold shock domain-containing protein 3-like1.3e-12795.42Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR--GGGGYG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR  GGGGYG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGR--GGGGYG

Query:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGGCYNCGGFGHLARDCNRGGAG
        FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDC RASNRGGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGGAGGG CYNCGGFGHLARDCNRGGAG
Subjt:  FGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGGCYNCGGFGHLARDCNRGGAG

Query:  GGSGGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFARECPD
        GGS GGGGGGCFNCGEYGHLARDCQNESR SGGGRF   GGGGANTCFNCGKSGHFARECPD
Subjt:  GGSGGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFARECPD

A0A6J1GAE9 cold shock protein 1-like3.0e-13798.85Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        M EERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGS

Query:  GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
         GGGGGGCFNCGEYGHLARDCQNESRNS GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  GGGGGGGCFNCGEYGHLARDCQNESRNS-GGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

A0A6J1KVQ4 cold shock domain-containing protein 3-like9.8e-13697.72Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFG

Query:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGN-SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG
        GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCAR SNRGGGGGSGGGCFTCGEVGHLARDC RGN  GGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG
Subjt:  GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGN-SGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGGCFNCGEYGHLARDCQNESRN-SGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
         GGGGGGGCFNCGEYGHLARDCQNESRN SGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP
Subjt:  SGGGGGGGCFNCGEYGHLARDCQNESRN-SGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP

E5RDD6 Cold-shock DNA-binding family protein1.3e-12791.51Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGG-------GGRGGRG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA GDDGKSKAIEVVALDGSSGNRRDNFGGG       GGRGG G
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGG-------GGRGGRG

Query:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNR-GGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGGCYNCGGFGHLARDC
        GGGYGFGGWRGGDRRNG+SG GGGGCYQCGEQGHLARDC R SNR GGGGG GGGCFTCGEVGHLARDCPRGNS GGGGGG+GGG CYNCGGFGHLARDC
Subjt:  GGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNR-GGGGGSGGGCFTCGEVGHLARDCPRGNS-GGGGGGAGGGGCYNCGGFGHLARDC

Query:  NRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNS--GGGRFGGGGGGGANTCFNCGKSGHFARECPDA
        NRGGAGGGSGGGGGGGCFNCGEYGH+ARDCQNESR S  GGGRFGGGGGGG+NTCFNCGKSGHFARECPDA
Subjt:  NRGGAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNS--GGGRFGGGGGGGANTCFNCGKSGHFARECPDA

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 14.6e-5049.13Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--------
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G R G GG G        
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--------

Query:  -----YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGG--GGAGGG--GCYNCGGF
              G GG  GG  R      GG GCY CG+ GH ARDC  A N   RG   G   GC+TCG+VGH+ARDC + + G G   G   GG  GCY CG  
Subjt:  -----YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGG--GGAGGG--GCYNCGGF

Query:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARDCQNESRNSGG--------------GRFGGGGGGGANTCFNCGKSGHFAREC
        GH ARDC +  A G   SGGGG G C++CG  GH+ARDC  + + S G               + G GGGG  N C+ CGK GHFAREC
Subjt:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARDCQNESRNSGG--------------GRFGGGGGGGANTCFNCGKSGHFAREC

P27484 Glycine-rich protein 22.7e-4249.62Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ SG DG++KA++V   DG++  G R    GGGGG GGRGGG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSS--GNRRDNFGGGGGRGGRGGG

Query:  GYGFG-GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRG
        GYG G G  GG  R GS G GGG                     GGGGG GGG                   GGGGGG GGGG Y               
Subjt:  GYGFG-GWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNSGGGRF-GGGGGGGANTCFNCGKSGHFAREC
           GG G GGG GCF CGE GH ARDC       GGGRF GGGGGGG   C+ CG+ GHFAREC
Subjt:  GAGGGSGGGGGGGCFNCGEYGHLARDCQNESRNSGGGRF-GGGGGGGANTCFNCGKSGHFAREC

Q38896 Cold shock domain-containing protein 46.7e-3348.03Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWR
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+    + N GGGG  GGR  GG+G GG R
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWR

Query:  GGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGG
        GG R  GS G G GG               R S   GGGG    CF CGE GH+AR+C +G  GGG  G GGGG Y              G  GGG GGG
Subjt:  GGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGG

Query:  GGGGCFNCGEYGHLARDCQNESRNSGGGR
        GG  C++CGE GH ARDC      SGG R
Subjt:  GGGGCFNCGEYGHLARDCQNESRNSGGGR

Q41188 Cold shock protein 23.8e-3649.34Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN      GGG  GGRG    GFGG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGG

Query:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG
         RGG R +G    GGGG Y                 RGGGG  G  C+ CGE GH+ARDC  G    GGGGGG GGGG Y  GG G+        G GG 
Subjt:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGGCFNCGEYGHLARDCQNESR
         GGGGGG C++CGE GH ARDC +  R
Subjt:  SGGGGGGGCFNCGEYGHLARDCQNESR

Q94C69 Cold shock domain-containing protein 32.4e-5450.33Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRG--------------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G G                
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRG--------------

Query:  GRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARA--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN-----SGGGGGGAGGGGCYNCGG
          G GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGG G  C++CGEVGHLA+DC  G+      GGGG G+GG GCY CGG
Subjt:  GRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARA--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN-----SGGGGGGAGGGGCYNCGG

Query:  FGHLARDCNRGG----AGGGS----------------------GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFAREC
         GH ARDC + G     GGGS                      GGGGG  C+ CG  GHLARDC  + R SG      GGGGG+N CF CGK GHFAREC
Subjt:  FGHLARDCNRGG----AGGGS----------------------GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFAREC

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 31.7e-5550.33Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRG--------------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G G                
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRG--------------

Query:  GRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARA--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN-----SGGGGGGAGGGGCYNCGG
          G GG  FGG  GG RR+G    G G CY CG+ GH ARDC ++   N GGGGG G  C++CGEVGHLA+DC  G+      GGGG G+GG GCY CGG
Subjt:  GRGGGGYGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARA--SNRGGGGGSGGGCFTCGEVGHLARDCPRGN-----SGGGGGGAGGGGCYNCGG

Query:  FGHLARDCNRGG----AGGGS----------------------GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFAREC
         GH ARDC + G     GGGS                      GGGGG  C+ CG  GHLARDC  + R SG      GGGGG+N CF CGK GHFAREC
Subjt:  FGHLARDCNRGG----AGGGS----------------------GGGGGGGCFNCGEYGHLARDCQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFAREC

AT2G21060.1 glycine-rich protein 2B4.8e-3448.03Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWR
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+    + N GGGG  GGR  GG+G GG R
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWR

Query:  GGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGG
        GG R  GS G G GG               R S   GGGG    CF CGE GH+AR+C +G  GGG  G GGGG Y              G  GGG GGG
Subjt:  GGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGG

Query:  GGGGCFNCGEYGHLARDCQNESRNSGGGR
        GG  C++CGE GH ARDC      SGG R
Subjt:  GGGGCFNCGEYGHLARDCQNESRNSGGGR

AT4G36020.1 cold shock domain protein 13.3e-5149.13Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--------
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G R G GG G        
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGG--------

Query:  -----YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGG--GGAGGG--GCYNCGGF
              G GG  GG  R      GG GCY CG+ GH ARDC  A N   RG   G   GC+TCG+VGH+ARDC + + G G   G   GG  GCY CG  
Subjt:  -----YGFGGWRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASN---RGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGG--GGAGGG--GCYNCGGF

Query:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARDCQNESRNSGG--------------GRFGGGGGGGANTCFNCGKSGHFAREC
        GH ARDC +  A G   SGGGG G C++CG  GH+ARDC  + + S G               + G GGGG  N C+ CGK GHFAREC
Subjt:  GHLARDCNRGGAGGG--SGGGGGGGCFNCGEYGHLARDCQNESRNSGG--------------GRFGGGGGGGANTCFNCGKSGHFAREC

AT4G38680.1 glycine rich protein 22.7e-3749.34Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN      GGG  GGRG    GFGG
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGRGGRGGGGYGFGG

Query:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG
         RGG R +G    GGGG Y                 RGGGG  G  C+ CGE GH+ARDC  G    GGGGGG GGGG Y  GG G+        G GG 
Subjt:  WRGGDRRNGSSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNS--GGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGG

Query:  SGGGGGGGCFNCGEYGHLARDCQNESR
         GGGGGG C++CGE GH ARDC +  R
Subjt:  SGGGGGGGCFNCGEYGHLARDCQNESR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTC
CATTAAATCAGATGGCTACCGTAGCCTGGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCGAAAGCTATTGAGGTCGTTGCGCTTGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGCCGGGGCGGCCGGGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGC
AGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTGCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGG
TTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGCGGCGGGGCCGGTGGTGGGGGTTGTTATAATTGTGGTGGTT
TTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAGTATGGGCATTTAGCCAGAGAT
TGCCAGAATGAAAGCCGTAACAGCGGCGGCGGAAGATTTGGTGGCGGAGGTGGCGGTGGCGCCAACACTTGCTTCAATTGCGGGAAATCGGGGCATTTTGCTAGGGAGTG
TCCTGATGCACCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGTGTGGTTCAATGGTTCAACGATTCGAAGGGGTTCGGGTTCATCAAGCCAGATGTGGAAGGACCTGATCTGTTTGTTCATCAATCCTC
CATTAAATCAGATGGCTACCGTAGCCTGGTCGTTGGAGATCATGTTGAGTTTCAGATCGCTTCGGGTGATGATGGGAAATCGAAAGCTATTGAGGTCGTTGCGCTTGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGGGGTGGTGGTGGCCGGGGCGGCCGGGGCGGCGGGGGTTATGGGTTTGGTGGTTGGAGGGGCGGTGATAGGCGGAATGGC
AGCAGTGGAGCCGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGACTGTGCCCGTGCTAGTAACCGCGGCGGAGGAGGTGGCAGCGGTGGTGG
TTGTTTTACTTGCGGTGAAGTTGGCCACTTAGCGAGGGATTGTCCACGAGGAAACAGCGGCGGAGGCGGCGGCGGGGCCGGTGGTGGGGGTTGTTATAATTGTGGTGGTT
TTGGGCACTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGTGGTGGTGGTGGTGGTTGCTTTAATTGTGGGGAGTATGGGCATTTAGCCAGAGAT
TGCCAGAATGAAAGCCGTAACAGCGGCGGCGGAAGATTTGGTGGCGGAGGTGGCGGTGGCGCCAACACTTGCTTCAATTGCGGGAAATCGGGGCATTTTGCTAGGGAGTG
TCCTGATGCACCATGA
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIASGDDGKSKAIEVVALDGSSGNRRDNFGGGGGRGGRGGGGYGFGGWRGGDRRNG
SSGAGGGGCYQCGEQGHLARDCARASNRGGGGGSGGGCFTCGEVGHLARDCPRGNSGGGGGGAGGGGCYNCGGFGHLARDCNRGGAGGGSGGGGGGGCFNCGEYGHLARD
CQNESRNSGGGRFGGGGGGGANTCFNCGKSGHFARECPDAP