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Carg16268 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16268
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionbeta-carotene isomerase D27, chloroplastic
Genome locationCarg_Chr06:2892945..2896955
RNA-Seq ExpressionCarg16268
SyntenyCarg16268
Gene Ontology termsGO:0005506 - iron ion binding (molecular function)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR025114 - Beta-carotene isomerase D27-like, C-terminal
IPR038938 - Beta-carotene isomerase D27-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596672.1 Beta-carotene isomerase D27, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.4e-4297.62Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCK+PTQDFFT+EFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

KAG7028208.1 Beta-carotene isomerase D27, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.3e-56100Show/hide
Query:  MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCP
        MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCP
Subjt:  MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCP

Query:  KLLA
        KLLA
Subjt:  KLLA

XP_022942554.1 beta-carotene isomerase D27, chloroplastic [Cucurbita moschata]1.6e-43100Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

XP_023005623.1 beta-carotene isomerase D27, chloroplastic [Cucurbita maxima]2.3e-4298.81Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP FEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

XP_023540699.1 beta-carotene isomerase D27, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-43100Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

TrEMBL top hitse value%identityAlignment
A0A1S3BKU4 beta-carotene isomerase D27, chloroplastic5.6e-4296.43Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSN S+ LCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

A0A5A7UFH7 Beta-carotene isomerase D275.6e-4296.43Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSN S+ LCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

A0A6J1FRN3 beta-carotene isomerase D27, chloroplastic7.8e-44100Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

A0A6J1L2P3 beta-carotene isomerase D27, chloroplastic1.1e-4298.81Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPP FEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

A0A803L5C4 Uncharacterized protein8.0e-4191.67Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNP FEDMSCEM+YGQVPPPFEED VSKQPCYKD+CSM+NPS+SLCPKLL+
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

SwissProt top hitse value%identityAlignment
C7AU21 Beta-carotene isomerase D27, chloroplastic1.5e-2055.84Show/hide
Query:  NVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDIC
        NV+  P  R+LE++ CVGMC N+CKIP Q F  +  G+ + M+PNFEDMSCEMI+GQ PP  E+DP  KQPC++  C
Subjt:  NVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDIC

Q7XA78 Beta-carotene isomerase D27, chloroplastic1.9e-1853.03Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYK
        R+LE S CVGMC ++CKIP+Q F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  KQPC++
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYK

R4HZ96 Beta-carotene isomerase D27, chloroplastic3.1e-2149.43Show/hide
Query:  NVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLC
        N++     R+LE + CVGMC+N+CK+P+Q F  + FG+P+ M PNF+DMSCEMI+GQ PP   +DP  KQPCYK +C      ++ C
Subjt:  NVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLC

Arabidopsis top hitse value%identityAlignment
AT1G03055.1 unknown protein1.3e-1953.03Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYK
        R+LE S CVGMC ++CKIP+Q F  N  G+P+ M P+F D+SC+M++G+ PP  E+DP  KQPC++
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYK

AT1G64680.1 unknown protein1.0e-4086.9Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA
        RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPN+EDMSCEMIYGQ PP FEED  +KQPC  DICSMSNPSS +CPKL A
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA

AT4G01995.1 unknown protein5.2e-1645.78Show/hide
Query:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNP---SSSLCP
        +YLE S CVG+C+N CK+PTQ FF +  G+PL M PNF+D SC+  +G  PP  E+D    +PC+ + CS++      S  CP
Subjt:  RYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNP---SSSLCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTTTCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAA
GATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCTCACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGT
TCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATATGTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAA
mRNA sequenceShow/hide mRNA sequence
AATAATATCTAAACGTTAGCCATCAAGTTCATCAAAACCTCTTGATGATCTCGGATCGATGATATTGTTCACTTCAACGGTCTCAACCGACACGATTGTAACTTCAGTTT
CACCTAAAGTACTTCATTCCGTTCTTTATATCTTAATGTCTGTCCTGTTCTTGCCCACGTCTCTAAGATTGTGAATAGATAGAGACAAGACATGAGACGATATCAACCAC
CCAGAACGGGTATCGTATGCATAGAGGATATCATATCAATTAAAGCAAAATTTGAAGAGGAAGAAGCATACAGTACCATACCACAAATGGTGGTCTTGAAGCTACAAAGC
GCCCAATTCTTCACAGCTCCGTGTGAGATTAGGAGTAGAAAAAGGGGGAATGGTCAGAAATTTAGTAGAATTATTCGATGTGGGATTGCGGAGGCTTCTGGTGAGCCAGC
GCCATTGGGCCAAAAAACCAAATACAATGATGGGCCATTTGAGAAGGTTTTCATGACACTTTTTGCGAAGAAAATGGAGAGATACGCAAATTCCAAGGAGCAAATGAAGA
AGATCGGATGGTGGGATTTTCTTTATGACTATGAACGATTCGTCGATGCGTCAAAAAGGGTTATGCAAGGGAAGAATCGTATGCAACAACAGCTCGTGGTTCGTGAGGTT
CTCTTGTCTATGCTCCCTCCCGGCGCTCCGGCTCAGTTCAGGAAATTGTTTCCTCCAACGAAATGGGCTTGTGAGTTCAATGCTTCGATAACGGTGCCGTTCTTTCAGTG
GTTAGTCGGCCCATCGGAGGTTGTGGAAGTGGAGGTAAACGGTATAAAGCAAAGAAGCGGAGTTCATATAAAGAAATGCAGGTATAAACTACATTTTCGTTATAACCAAA
TTTCTAGTCGATTTAGGAAAACGCTTCTCCTTCGTCTGTCTCCGTCGATAAGCTAAGACTACAACATGAACGAACGCGAATCTGTCCATTCGATTTTCTTTAACGTACTT
TCGAATCCCCATCGAAGGTACCTCGAGAACAGTGGGTGTGTGGGTATGTGTGTGAATATGTGCAAGATACCCACACAAGATTTCTTCACCAACGAATTTGGGCTCCCTCT
CACCATGAATCCGAATTTTGAAGACATGAGCTGTGAGATGATATACGGGCAAGTTCCACCGCCGTTCGAAGAGGATCCCGTGTCGAAGCAACCGTGCTACAAGGATATAT
GTTCCATGTCCAATCCTAGCTCCTCGTTATGTCCTAAATTACTAGCTTAAATGACATTCTTTCATGGTTTGATTCTGTTCATCACCATGTCTGCATACGCTGTCGGATAC
ATACTGTAGTGTATAGATTCTCTTGCTATGTCAGAGAGGCAACAATGTTGTTGTTTCTTTGCAAACTTCACTATGTTTGCTAGATCATATACAATAAAGAAGATTATTTC
CTTAGGAATGTTTCATGAACGTTCGGTCGGGATTTGAGCATTTGACTTACTTTTTTCTGGTCGAAGATTTAATGTCTTAACCAATTGAAAGTTCACGATACGAGGTAAAT
CTTGTTACTAATTTATGATTTAATGTTTTATCTCTATATATAGAGAGAGGAACGAACAATTTTTTATAAAAATGTGGAAACCTCTCTCTAGTAAATGCGTTTTGAAACTG
TGAGGCTGACGGTGATATATAACAGGCC
Protein sequenceShow/hide protein sequence
MNERESVHSIFFNVLSNPHRRYLENSGCVGMCVNMCKIPTQDFFTNEFGLPLTMNPNFEDMSCEMIYGQVPPPFEEDPVSKQPCYKDICSMSNPSSSLCPKLLA