CuGenDBv2

Gene ID	Carg16270
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mediator of RNA polymerase II transcription subunit 10
Genome location	Carg_Chr06:2903251..2908339
RNA-Seq Expression	Carg16270
Synteny	Carg16270
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596674.1 hypothetical protein SDJN03_09854, partial [Cucurbita argyrosperma subsp. sororia]

6.6e-25

93.44

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Query:  TRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNF
        +R  +TTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNF
Subjt:  TRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNF

KAG7028210.1 Mediator of RNA polymerase II transcription subunit 10a, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.1e-109

100

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLG
        MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLG
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLG

Query:  FSTRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLN
        FSTRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLN
Subjt:  FSTRVRQTTWGLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLN

Query:  CFKF
        CFKF
Subjt:  CFKF

XP_008448559.1 PREDICTED: mediator of RNA polymerase II transcription subunit 10b isoform X1 [Cucumis melo]

1.8e-22

46.49

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

XP_022923485.1 mediator of RNA polymerase II transcription subunit 10b-like [Cucurbita moschata]

1.1e-22

46.49

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE++RIAQ+QSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

XP_038876576.1 mediator of RNA polymerase II transcription subunit 10b-like [Benincasa hispida]

3.1e-22

46.49

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGS GNGSVINDTSA T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3Q2 Mediator of RNA polymerase II transcription subunit 10

3.3e-22

45.95

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDT   T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

A0A1S3BJY3 Mediator of RNA polymerase II transcription subunit 10

8.7e-23

46.49

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDTS  T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

A0A6J1CVZ0 Mediator of RNA polymerase II transcription subunit 10

5.6e-22

45.41

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDTSA  +VDDS                                        NSLV+ELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE +RIAQAQSMLPNGD+K+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

A0A6J1E6X8 Mediator of RNA polymerase II transcription subunit 10

5.1e-23

46.49

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE++RIAQ+QSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

A0A6J1HLJ2 Mediator of RNA polymerase II transcription subunit 10

5.1e-23

46.49

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Query:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------
        MD AQNASSAAGTGGSGGNGSVINDTSA T+VDDS                                        NSLVLELDNM               
Subjt:  MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPT-------------------------------------NSLVLELDNM---------------

Query:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
                                            GLRKHLLEELEQTFPDEVESYREIRA+SAAE++RIAQ+QSMLPNGDMK+
Subjt:  ------------------------------------GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

SwissProt top hits

e value

%identity

Alignment

F4HPA7 Mediator of RNA polymerase II transcription subunit 10b

3.5e-13

77.08

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Query:  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
        LRKH+LEELEQ FPDEV+ YREIRASSAA T+R+AQ+QS+LPNGD K+
Subjt:  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

Q9FHZ2 Mediator of RNA polymerase II transcription subunit 10a

2.7e-13

75.51

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Query:  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
        GLRKHLLEELEQ FPDEV+ YR+IRAS AAE +R+AQ QS+LPNGD K+
Subjt:  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

Arabidopsis top hits

e value

%identity

Alignment

AT1G26665.1 Mediator complex, subunit Med10

1.5e-14

77.08

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Query:  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
        LRKH+LEELEQ FPDEV+ YREIRASSAAE +R+AQ+QS+LPNGD K+
Subjt:  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

AT1G26665.2 Mediator complex, subunit Med10

2.5e-14

77.08

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Query:  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
        LRKH+LEELEQ FPDEV+ YREIRASSAA T+R+AQ+QS+LPNGD K+
Subjt:  LRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

AT5G41910.1 Mediator complex, subunit Med10

1.9e-14

75.51

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Query:  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL
        GLRKHLLEELEQ FPDEV+ YR+IRAS AAE +R+AQ QS+LPNGD K+
Subjt:  GLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKL

Sequences

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CDS sequence

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ATGGATTTAGCTCAGAATGCATCTTCAGCTGCTGGGACTGGTGGAAGTGGTGGCAATGGATCGGTCATCAATGATACGTCTGCATTAACTTCAGTGGATGATTCGAATCC
AACTAATTCACTAGTTTTGGAGCTAGATAACATGGGTTTACGGAAGCATCTTTTGGAGGAACTTGAACAGACATTTCCCGATGAAGTTGAGTCTTACAGAGAAATTCGTG
CTTCTTCTGCTGCCGAAACAGAAAGGATCGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGCTGTATCTTGGTTTCTCCACTCGAGTGCGGCAGACAACGTGG
GGTTTGGTGGCGGCTAATGAATTAGCACGGCAAAAGCAACACAAGATGACAGATGTCCTGGCACTATCGCTTATTCGTATTCATTGGGCGAATCAAGGCGGAAAACATCC
CATCTACAATCTCCAAACGTTGAACTTCGGATTTTACTGCACCAATTTCGTACGGATTACCGTTCATGGAGATAGGAGGATTCTAATCTGTGGCTTCTTGATCGAAAGTT
TACGTGTTTATCCGTTGTGCTATAATCAGGTTGGTTTTCCAGGGCTTAATTGTTTCAAATTTTAA

mRNA sequence

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Protein sequence

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MDLAQNASSAAGTGGSGGNGSVINDTSALTSVDDSNPTNSLVLELDNMGLRKHLLEELEQTFPDEVESYREIRASSAAETERIAQAQSMLPNGDMKLYLGFSTRVRQTTW
GLVAANELARQKQHKMTDVLALSLIRIHWANQGGKHPIYNLQTLNFGFYCTNFVRITVHGDRRILICGFLIESLRVYPLCYNQVGFPGLNCFKF

Carg16270 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome