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Carg16281 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16281
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnuclear RNA polymerase C2
Genome locationCarg_Chr06:2974735..2979526
RNA-Seq ExpressionCarg16281
SyntenyCarg16281
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028221.1 hypothetical protein SDJN02_09401, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-98100Show/hide
Query:  MTKDVVIGKMPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVW
        MTKDVVIGKMPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVW
Subjt:  MTKDVVIGKMPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVW

Query:  KSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVGYALSCDTPEGEACELVKNLALMTRVTTKAH
        KSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVGYALSCDTPEGEACELVKNLALMTRVTTKAH
Subjt:  KSVKDLCKHIWVLKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVGYALSCDTPEGEACELVKNLALMTRVTTKAH
XP_023540536.1 uncharacterized protein LOC111800873 isoform X1 [Cucurbita pepo subsp. pepo]3.5e-5168.57Show/hide
Query:  MPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKH
        MPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHM HLSDL YGSFVNVITIYHK     + +   L       +T K        S+++  + 
Subjt:  MPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKH

Query:  IWV---LKVKQPSDAEVEKLVQDVEKYTLASHLVFG------WVGYALSCDTPEGEACELVKNLALMTRVTTKAH
        I+V   +  K PSD+EVEKLVQDVEKYTLASHLV+G      WVGYALS DTPEGEACELVKNLALMT VTTKAH
Subjt:  IWV---LKVKQPSDAEVEKLVQDVEKYTLASHLVFG------WVGYALSCDTPEGEACELVKNLALMTRVTTKAH
XP_023540541.1 uncharacterized protein LOC111800873 isoform X2 [Cucurbita pepo subsp. pepo]1.8e-3461.74Show/hide
Query:  LTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHIWV---LKVKQPSDAEVEKLVQDVEK
        + FFDVRISKPCPHM HLSDL YGSFVNVITIYHK     + +   L       +T K        S+++  + I+V   +  K PSD+EVEKLVQDVEK
Subjt:  LTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHIWV---LKVKQPSDAEVEKLVQDVEK

Query:  YTLASHLVFG------WVGYALSCDTPEGEACELVKNLALMTRVTTKAH
        YTLASHLV+G      WVGYALS DTPEGEACELVKNLALMT VTTKAH
Subjt:  YTLASHLVFG------WVGYALSCDTPEGEACELVKNLALMTRVTTKAH
XP_023540542.1 uncharacterized protein LOC111800873 isoform X3 [Cucurbita pepo subsp. pepo]1.8e-3461.74Show/hide
Query:  LTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHIWV---LKVKQPSDAEVEKLVQDVEK
        + FFDVRISKPCPHM HLSDL YGSFVNVITIYHK     + +   L       +T K        S+++  + I+V   +  K PSD+EVEKLVQDVEK
Subjt:  LTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHIWV---LKVKQPSDAEVEKLVQDVEK

Query:  YTLASHLVFG------WVGYALSCDTPEGEACELVKNLALMTRVTTKAH
        YTLASHLV+G      WVGYALS DTPEGEACELVKNLALMT VTTKAH
Subjt:  YTLASHLVFG------WVGYALSCDTPEGEACELVKNLALMTRVTTKAH
XP_023540543.1 uncharacterized protein LOC111800873 isoform X4 [Cucurbita pepo subsp. pepo]1.8e-3464.75Show/hide
Query:  MPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKH
        MPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHM HLSDL YGSFVNVITIYHK     + +   L       +T K        S+++  + 
Subjt:  MPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKH

Query:  IWV---LKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVG
        I+V   +  K PSD+EVEKLVQDVEKYTLASHLV+G  G
Subjt:  IWV---LKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVG
TrEMBL top hitse value%identityAlignment
A0A7J7HT89 Uncharacterized protein2.0e-0435Show/hide
Query:  FVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHI----WVLKV-----------KQPSDAEVEKLVQDVEKYTLASHLVFGWVG
        F  ++  YH +    +   +Y G               VW+SV+DLC++I    WVL +            QPSD EV++LV D EKYTLA+HL +G  G
Subjt:  FVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHI----WVLKV-----------KQPSDAEVEKLVQDVEKYTLASHLVFGWVG
SwissProt top hitse value%identityAlignment
F4KD38 DNA-directed RNA polymerase III subunit 23.4e-0475Show/hide
Query:  GYALSCDTPEGEACELVKNLALMTRVTT
        G    CDTPEGE+C LVKNLALMT VTT
Subjt:  GYALSCDTPEGEACELVKNLALMTRVTT
Arabidopsis top hitse value%identityAlignment
AT1G74320.1 Protein kinase superfamily protein1.2e-0463.33Show/hide
Query:  KQPSDAEVEKLVQDVEKYTLASHLVFGWVG
        ++PSD  V+KL++DVEKYTLASHL++G  G
Subjt:  KQPSDAEVEKLVQDVEKYTLASHLVFGWVG
AT5G45140.1 nuclear RNA polymerase C22.4e-0575Show/hide
Query:  GYALSCDTPEGEACELVKNLALMTRVTT
        G    CDTPEGE+C LVKNLALMT VTT
Subjt:  GYALSCDTPEGEACELVKNLALMTRVTT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAAAGACGTGGTGATTGGGAAGATGCCTATTGGCGAGCCTTTTGTGACCGTGAATGCTGTCAGTGAATCTATTAGTTTTCATATGTGCCGCTTATCTGACCTTAC
GTTCTTTGATGTAAGAATTAGCAAGCCTTGTCCTCATATGTGCCACTTATCTGACCTTATGTATGGTTCGTTCGTGAATGTTATTACCATTTACCATAAAAATTTGAGAG
TGTACATAAAGCTTCCAATCTATCTCGGCATGTCTTTTTTCTGCAAGAACACAGCTAAGAATCTTTATTGCTGGGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATA
TGGGTGCTAAAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGATGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTTTGGGTGGGTGGGGTATGC
TTTGTCATGCGATACTCCAGAAGGTGAGGCTTGTGAACTTGTGAAAAACTTGGCTCTGATGACTCGTGTAACGACAAAGGCCCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAAAGACGTGGTGATTGGGAAGATGCCTATTGGCGAGCCTTTTGTGACCGTGAATGCTGTCAGTGAATCTATTAGTTTTCATATGTGCCGCTTATCTGACCTTAC
GTTCTTTGATGTAAGAATTAGCAAGCCTTGTCCTCATATGTGCCACTTATCTGACCTTATGTATGGTTCGTTCGTGAATGTTATTACCATTTACCATAAAAATTTGAGAG
TGTACATAAAGCTTCCAATCTATCTCGGCATGTCTTTTTTCTGCAAGAACACAGCTAAGAATCTTTATTGCTGGGTTTGGAAGAGCGTAAAAGATTTGTGCAAACATATA
TGGGTGCTAAAGGTCAAGCAGCCCAGTGATGCTGAGGTGGAGAAATTAGTCCAAGATGTTGAGAAGTATACTCTTGCTAGCCATCTTGTTTTTGGGTGGGTGGGGTATGC
TTTGTCATGCGATACTCCAGAAGGTGAGGCTTGTGAACTTGTGAAAAACTTGGCTCTGATGACTCGTGTAACGACAAAGGCCCATTAATTTCTATGGTATTGCTCACAAC
CGTTACTTCTTTAATCGCATTTGGGCCCTCTTTTTTTCATAGCATATATTCTCCCTTGTGTGAACTGCTGAATCATGCTTGACAATAGGGTTGAATAGAAGAGTCAGGTT
ATTCCCATAATTATCTTCTTTAGGAACAATTGCTCGAGATGAAAGAAGATGTTGGTTGTTATCACTCAGTTGACACGAAACAATTGTCAAATAAAAAAGAATTGTTCAAG
ATCTTGTTGGAGTTAAATAACAATTGTTCGAGATGGAAGAGATTCAATATGAAGGATGGATGATGACATGTACCGGGCTAGAATCTTCAGTTCAAGCTTCTAGGACTGAA
GGATCATGAGCTAGACCAAGACGGTGTCTGCATAGGCAAAGCGAGTGCTAGCGAGGATGTTGGGCCTTGAAAGGGGGTGTATTGTGAGATC
Protein sequenceShow/hide protein sequence
MTKDVVIGKMPIGEPFVTVNAVSESISFHMCRLSDLTFFDVRISKPCPHMCHLSDLMYGSFVNVITIYHKNLRVYIKLPIYLGMSFFCKNTAKNLYCWVWKSVKDLCKHI
WVLKVKQPSDAEVEKLVQDVEKYTLASHLVFGWVGYALSCDTPEGEACELVKNLALMTRVTTKAH