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Carg16297 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16297
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LOW PSII ACCUMULATION 3, chloroplastic
Genome locationCarg_Chr06:3073004..3076221
RNA-Seq ExpressionCarg16297
SyntenyCarg16297
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6596702.1 COBW domain-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2758.57Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGE--------FDTVMFGFRLSNKLQAKKAIEAALSDNE----QLIE
        MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLG+        FD   F F L         + + L D E     L  
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGE--------FDTVMFGFRLSNKLQAKKAIEAALSDNE----QLIE

Query:  NFQPLDLN-QIQVKDYPPFFHLKLAAVLPGSLGSPYKCEA
        +   + L+ +  VKDYPPFFHLKLAAV+         C A
Subjt:  NFQPLDLN-QIQVKDYPPFFHLKLAAVLPGSLGSPYKCEA

KAG7015785.1 hypothetical protein SDJN02_23423, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-1049.51Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ
        M FSNANF   STIP A+LPL S  +ACFR+SHRK H S  SSS++ FMA RNL                +FD            QAKKA EAAL DN+Q
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ

Query:  LIE
        L+E
Subjt:  LIE

KAG7028235.1 hypothetical protein SDJN02_09416 [Cucurbita argyrosperma subsp. argyrosperma]7.7e-73100Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKLQAKKAIEAALSDNEQLIENFQPLDLNQIQV
        MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKLQAKKAIEAALSDNEQLIENFQPLDLNQIQV
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKLQAKKAIEAALSDNEQLIENFQPLDLNQIQV

Query:  KDYPPFFHLKLAAVLPGSLGSPYKCEAEGSRFQHSSIIFGV
        KDYPPFFHLKLAAVLPGSLGSPYKCEAEGSRFQHSSIIFGV
Subjt:  KDYPPFFHLKLAAVLPGSLGSPYKCEAEGSRFQHSSIIFGV

XP_022923333.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita moschata]2.4e-1049.51Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ
        M FSNANF   STIP A+LPL S  +ACFR+SHRK H S  SSS++ FMA RNL                +FD            QAKKA EAAL DN+Q
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ

Query:  LIE
        L+E
Subjt:  LIE

XP_023553103.1 protein LOW PSII ACCUMULATION 3, chloroplastic [Cucurbita pepo subsp. pepo]1.1e-1050.49Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ
        M FSNANF   STIP A+LPL S  FACFR+SHRK H S  SSS++ FMA RNL                +FD            QAKKA EAAL DN+Q
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ

Query:  LIE
        L+E
Subjt:  LIE

TrEMBL top hitse value%identityAlignment
A0A1S3BK29 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X11.5e-1050.96Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKL----------------QAKKAIEAALSDNE
        M FSNANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   + SN                  QAKKA EAAL DN+
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKL----------------QAKKAIEAALSDNE

Query:  QLIE
        QL+E
Subjt:  QLIE

A0A1S3BKQ4 protein LOW PSII ACCUMULATION 3, chloroplastic isoform X21.5e-1050.96Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKL----------------QAKKAIEAALSDNE
        M FSNANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   + SN                  QAKKA EAAL DN+
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKL----------------QAKKAIEAALSDNE

Query:  QLIE
        QL+E
Subjt:  QLIE

A0A5D3CIQ2 Protein LOW PSII ACCUMULATION 31.5e-1050.96Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKL----------------QAKKAIEAALSDNE
        M FSNANF   STI  A+LPLSS   ACFRISHRK H SF SSSM  FM  RNL      +   + SN                  QAKKA EAAL DN+
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKL----------------QAKKAIEAALSDNE

Query:  QLIE
        QL+E
Subjt:  QLIE

A0A6J1E988 protein LOW PSII ACCUMULATION 3, chloroplastic1.2e-1049.51Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ
        M FSNANF   STIP A+LPL S  +ACFR+SHRK H S  SSS++ FMA RNL                +FD            QAKKA EAAL DN+Q
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ

Query:  LIE
        L+E
Subjt:  LIE

A0A6J1HNL5 protein LOW PSII ACCUMULATION 3, chloroplastic2.2e-0947.57Show/hide
Query:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ
        M FSNA F   STIP A+LPL S  +ACFR+ HRK H S  SSS++ FMA RNL                +FD            QAKKA EAAL DN+Q
Subjt:  MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNL---------------GEFDTVMFGFRLSNKLQAKKAIEAALSDNEQ

Query:  LIE
        L+E
Subjt:  LIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTTTCTCCAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATTTTGCGTGTTTCAGGATTTCGCACCGGAAGTTTCA
TTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGATACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGAAGA
AAGCAATTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGAGAATTTCCAACCGTTGGACTTGAATCAGATCCAGGTGAAAGACTATCCACCATTTTTCCACCTAAAG
CTAGCGGCTGTGTTGCCCGGGTCCTTGGGAAGCCCTTACAAATGTGAGGCTGAAGGAAGTCGCTTTCAACATTCTTCCATCATCTTCGGCGTCTAG
mRNA sequenceShow/hide mRNA sequence
AATATCAATCGTCAATATTCTCTCTCTCTCTCTCTCTCTCTCTCCCGATTTTCCGTTTCACATTCGAAGTTCGAAGTGCTTCGTTCCGCAGGCAGGGTCTCCGACAGGAA
AAAATGCTTTTCTCCAACGCGAATTTCTTCGTTTGCTCTACCATTCCGATTGCGATTCTTCCACTTTCATCTGGATATTTTGCGTGTTTCAGGATTTCGCACCGGAAGTT
TCATTTCAGTTTCGATTCTAGTTCAATGATCGGGTTTATGGCGTTTAGAAATCTCGGCGAGTTCGATACTGTCATGTTCGGATTTCGTCTGTCAAACAAACTACAGGCGA
AGAAAGCAATTGAAGCGGCGTTAAGCGATAACGAACAGTTGATCGAGAATTTCCAACCGTTGGACTTGAATCAGATCCAGGTGAAAGACTATCCACCATTTTTCCACCTA
AAGCTAGCGGCTGTGTTGCCCGGGTCCTTGGGAAGCCCTTACAAATGTGAGGCTGAAGGAAGTCGCTTTCAACATTCTTCCATCATCTTCGGCGTCTAGCTAGTTGGTAG
ATATTATTGTTGATTCCAATCCCCTGTTCTCCGGCGTCATTGCCTCCTTTTCTGGTAAATATTACATACCTTTTCTGTCACTGAAACCAACACCAAAACTCACACCTGAT
CTCATCTGCCTATTTTCCATAGTTAAACAAATCTATTAAAGGCTAACAAGCTCTTAATCATTCAAATTCATTCAAGAACTTAAAAACATCAAAATGATAATCAAATTAAA
CTTCATGTACTCCTGCACGTAATTACAAACCCACGAGCTGTTAAAAAGATCATTATTTGTTCCATATTGCTAATAATCAATTCCCCTCCAAGAAATGCAGTACAAAAAAT
AAAACAAAATAATAATGAAATAAGAAAATATTACTAGGTGGAACTTCTAGTTACAGGCAATACCAAAAAAGCTTGAAGAGTGGTGGTACTGAGAAAACAACACCATTTAT
ACACTAAAATAGAAAGAGTTCTTTTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MLFSNANFFVCSTIPIAILPLSSGYFACFRISHRKFHFSFDSSSMIGFMAFRNLGEFDTVMFGFRLSNKLQAKKAIEAALSDNEQLIENFQPLDLNQIQVKDYPPFFHLK
LAAVLPGSLGSPYKCEAEGSRFQHSSIIFGV