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Carg16326 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16326
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr19:5937555..5938083
RNA-Seq ExpressionCarg16326
SyntenyCarg16326
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571916.1 LIM domain-containing protein WLIM1, partial [Cucurbita argyrosperma subsp. sororia]3.4e-4296.7Show/hide
Query:  MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAKIATAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTGYFVADAMVEADLRCISR
        MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAK+ TAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTG+FVADAMVEADLRCISR
Subjt:  MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAKIATAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTGYFVADAMVEADLRCISR
KAG7011602.1 hypothetical protein SDJN02_26508, partial [Cucurbita argyrosperma subsp. argyrosperma]5.9e-55100Show/hide
Query:  MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAKIATAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTGYFVADAMVEADLRCISRLEINSTIYL
        MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAKIATAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTGYFVADAMVEADLRCISRLEINSTIYL
Subjt:  MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAKIATAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTGYFVADAMVEADLRCISRLEINSTIYL

Query:  LFFFSFAVYFVVFVF
        LFFFSFAVYFVVFVF
Subjt:  LFFFSFAVYFVVFVF
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTGTATGAACCACAAATTACGACATCGAGGTCGAGATTCCTGTTCTTCTTCTTCTTTTTGCTGGCACTCTAAGAGAATCGGTTCATGTCGAACTGCTAAAATAGC
TACTGCAATGGCGAAAGCTCATATGGCGTGTATCTCTCAAGTTATTTCGGCTGGAGATTCTTATTCATCTTTTGTCAATACGTATGGAACTGCTAATAGAGGCGATACTG
GCTATTTCGTTGCAGATGCGATGGTGGAAGCTGATTTGAGGTGTATTTCGAGGTTAGAAATTAACAGCACAATTTACTTGCTGTTCTTTTTCTCTTTTGCGGTTTATTTC
GTAGTCTTCGTCTTC
mRNA sequenceShow/hide mRNA sequence
TCAACGTCACGGAAAAATGTCACTCACCGATGATTTATGCTCTGTATGAACCACAAATTACGACATCGAGGTCGAGATTCCTGTTCTTCTTCTTCTTTTTGCTGGCACTC
TAAGAGAATCGGTTCATGTCGAACTGCTAAAATAGCTACTGCAATGGCGAAAGCTCATATGGCGTGTATCTCTCAAGTTATTTCGGCTGGAGATTCTTATTCATCTTTTG
TCAATACGTATGGAACTGCTAATAGAGGCGATACTGGCTATTTCGTTGCAGATGCGATGGTGGAAGCTGATTTGAGGTGTATTTCGAGGTTAGAAATTAACAGCACAATT
TACTTGCTGTTCTTTTTCTCTTTTGCGGTTTATTTCGTAGTCTTCGTCTTC
Protein sequenceShow/hide protein sequence
MLCMNHKLRHRGRDSCSSSSFCWHSKRIGSCRTAKIATAMAKAHMACISQVISAGDSYSSFVNTYGTANRGDTGYFVADAMVEADLRCISRLEINSTIYLLFFFSFAVYF
VVFVF