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Carg16339 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg16339
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S29
Genome locationCarg_Chr19:6037716..6040001
RNA-Seq ExpressionCarg16339
SyntenyCarg16339
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001209 - Ribosomal protein S14
IPR039744 - 40S ribosomal protein S29/30S ribosomal protein S14 type Z
IPR043140 - Ribosomal protein S14/S29


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3435536.1 hypothetical protein FNV43_RR22625 [Rhamnella rubrinervis]6.2e-2798.21Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

KAG7011614.1 40S ribosomal protein S29, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-41100Show/hide
Query:  RILPLLGIFEALTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        RILPLLGIFEALTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  RILPLLGIFEALTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_002263938.1 PREDICTED: 40S ribosomal protein S29 [Vitis vinifera]3.7e-27100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_018827642.1 40S ribosomal protein S29-like [Juglans regia]4.8e-2781.43Show/hide
Query:  LTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        L+  + F    + IMGHSNVWNSHPK+YGPGSR CRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  LTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

XP_024162060.1 40S ribosomal protein S29 [Rosa chinensis]6.2e-2798.21Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYG+MCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

TrEMBL top hitse value%identityAlignment
A0A2I4F7M1 40S ribosomal protein S29-like2.3e-2781.43Show/hide
Query:  LTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        L+  + F    + IMGHSNVWNSHPK+YGPGSR CRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  LTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

A0A2P6Q0T9 Putative ribosomal protein S141.8e-27100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

A0A6J1EQ53 40S ribosomal protein S291.8e-27100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

A0A6J1JB08 40S ribosomal protein S291.8e-27100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

V7BB27 Uncharacterized protein1.8e-27100Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

SwissProt top hitse value%identityAlignment
Q4PM47 40S ribosomal protein S294.2e-1870.37Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q5I7K3 40S ribosomal protein S292.5e-2689.29Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK+YG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Q680P8 40S ribosomal protein S293.8e-2792.86Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Q6F473 40S ribosomal protein S299.4e-1868.52Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK
        MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK

Q7XYB0 40S ribosomal protein S292.6e-2069.64Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Arabidopsis top hitse value%identityAlignment
AT3G43980.1 Ribosomal protein S14p/S29e family protein2.7e-2892.86Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

AT3G44010.1 Ribosomal protein S14p/S29e family protein2.7e-2892.86Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

AT4G33865.1 Ribosomal protein S14p/S29e family protein2.7e-2892.86Show/hide
Query:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
        MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Subjt:  MGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGATTTTGCCGCTTCTTGGAATTTTTGAAGCCCTAACGAGCTCAACAGGTTTCCGTCTCGTAGGCGATTCAATCATGGGGCACTCGAACGTCTGGAACTCGCACCCTAA
GAGCTATGGTCCCGGCTCTCGCACCTGCCGGGTTTGCGGTAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGG
AAATTGGATTCATCAAGTACCGCTAA
mRNA sequenceShow/hide mRNA sequence
AGGATTTTGCCGCTTCTTGGAATTTTTGAAGCCCTAACGAGCTCAACAGGTTTCCGTCTCGTAGGCGATTCAATCATGGGGCACTCGAACGTCTGGAACTCGCACCCTAA
GAGCTATGGTCCCGGCTCTCGCACCTGCCGGGTTTGCGGTAATCCTCATGGGTTGATCAGAAAGTACGGCCTTATGTGCTGCAGACAGTGCTTCCGCAGCAACGCCAAGG
AAATTGGATTCATCAAGTACCGCTAAATGGCGAAATTTTGCCTCTCCTGCCTCTCCCATTAGAGAATGTTTAATGGATAGAATATGGTTGCTGGATTTGCTTATATAAGA
GAAAGAACCTTGAACTTCTTTTCTGTCCCTAGTTCATTATTTCCTTGAACCTCGTGTTGATTGTTGAACTTAGGCTACTACAATGCTGACTAATTTTGAAGATTAAGTTA
GTGTGTTTCATTTGTCTGAGTATTCTTGTTTTCCTCTCGTTCCTTCCTTTTTCCCCTCTAATGGTATTTGCTTTATAAAATGTGCGGATTAGAGTTGAAATCGAGTTGAC
CATCATAGTTTGGTCCAGCGAGAAATGGTCCATCTACCTTATAGGACTTAGAAGAAATGAATTAAGGTCTCATGGTTACTATCTATTTGGGATTTAATATCATATACGGT
TTCACTTTTCTATGTACGGATTAAAGTAGAAATCGAGTTAAACCATCTCATGGTTTGGTCTAGCGGAAAAGGGTCTATCAGGTAGAAATGAATTCAAGTCATGGTCACAA
TGTATTTAGGTCTATTTAGGATTTAATATCATATAAGGTTTCGTCCTAATGGTATCACTTTATAAATGTACAGACTAAAGTAGAAATCGAGTTAACCATCATGGTTTGGA
CTTAAGTGGAAAAGGGTCCATCTACCTGAATTTAAGTCATGGTCACTATCTATTTAGGATTTAATATCGCATAAGGTATAGCTAATGCATTGACCGAACACGTATGAAGT
ATAGACCTAGCCACACTACTACTGATTGGTGTGCCTACTATGATGGTACTCCAAATGGGGTCCTCCCCATTAGGCATTAATGCATGCTAAATTCAGTCTGAAACAGGGTC
TGGTCTGAACATATTAATTATGTTTTTGTTACTGGTAATTTGTGCATAGTTTTTAGTGATCTGTGGACCATTTATCAATTGCTTGGGCTCACCAGGGGACAGTCAACAAT
CTTGAAGGCTTGAAGATTCGTTCTTCGGACGCTTTGTAGACCAGGCCCCTTTTCTTTTCC
Protein sequenceShow/hide protein sequence
RILPLLGIFEALTSSTGFRLVGDSIMGHSNVWNSHPKSYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR